Variant report

Variant	rs73901804
Chromosome Location	chr20:23322495-23322496
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23321273..23323325-chr20:23328933..23330875,2	K562	blood:
2	chr20:23308765..23311437-chr20:23321405..23324295,2	MCF-7	breast:

rs_ID	r²[population]
rs16985225	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1891686	0.81[AMR][1000 genomes]
rs1891687	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs36010049	1.00[EUR][1000 genomes]
rs55939409	1.00[EUR][1000 genomes]
rs56122110	1.00[EUR][1000 genomes]
rs56830667	1.00[EUR][1000 genomes]
rs57226979	1.00[EUR][1000 genomes]
rs57368405	1.00[EUR][1000 genomes]
rs57456391	1.00[EUR][1000 genomes]
rs57782497	1.00[EUR][1000 genomes]
rs57842978	1.00[EUR][1000 genomes]
rs58592887	1.00[EUR][1000 genomes]
rs59499588	1.00[EUR][1000 genomes]
rs59893880	1.00[EUR][1000 genomes]
rs60127144	1.00[EUR][1000 genomes]
rs6036385	0.81[AMR][1000 genomes]
rs6036425	1.00[EUR][1000 genomes]
rs60394866	1.00[EUR][1000 genomes]
rs6048732	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6048733	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6048734	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6048735	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106654	1.00[EUR][1000 genomes]
rs6106670	1.00[EUR][1000 genomes]
rs6114092	1.00[EUR][1000 genomes]
rs6114096	1.00[EUR][1000 genomes]
rs6114099	1.00[EUR][1000 genomes]
rs6114102	1.00[EUR][1000 genomes]
rs6114143	1.00[EUR][1000 genomes]
rs6114148	1.00[EUR][1000 genomes]
rs6114149	1.00[EUR][1000 genomes]
rs7263724	1.00[EUR][1000 genomes]
rs73901806	1.00[EUR][1000 genomes]
rs73901807	1.00[EUR][1000 genomes]
rs73901808	1.00[EUR][1000 genomes]
rs73901810	1.00[EUR][1000 genomes]
rs73901812	1.00[EUR][1000 genomes]
rs73901814	1.00[EUR][1000 genomes]
rs73901818	1.00[EUR][1000 genomes]
rs73901819	1.00[EUR][1000 genomes]
rs73901821	1.00[EUR][1000 genomes]
rs73901823	1.00[EUR][1000 genomes]
rs73901825	1.00[EUR][1000 genomes]
rs73901827	1.00[EUR][1000 genomes]
rs73901857	1.00[EUR][1000 genomes]
rs73901858	1.00[EUR][1000 genomes]
rs73901861	1.00[EUR][1000 genomes]
rs73901862	1.00[EUR][1000 genomes]
rs73901863	1.00[EUR][1000 genomes]
rs73901872	1.00[EUR][1000 genomes]
rs73901874	1.00[EUR][1000 genomes]
rs73904259	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73904260	1.00[EUR][1000 genomes]
rs73904261	1.00[EUR][1000 genomes]

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23319600-23324600	Weak transcription	Fetal Heart	heart
2	chr20:23321600-23322600	Enhancers	GM12878-XiMat	blood
3	chr20:23321800-23329400	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links