Variant report

Variant	rs57782497
Chromosome Location	chr20:23317799-23317800
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23317010..23320085-chr20:23328448..23332223,4	MCF-7	breast:
2	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
3	chr20:22668961..22671832-chr20:23317292..23319487,3	MCF-7	breast:
4	chr20:23311621..23313833-chr20:23315735..23318823,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132661	Chromatin interaction
ENSG00000234832	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs36010049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56122110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830667	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57226979	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57368405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57456391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57842978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58592887	1.00[EUR][1000 genomes]
rs59499588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59893880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60127144	1.00[EUR][1000 genomes]
rs6036425	1.00[EUR][1000 genomes]
rs60394866	1.00[EUR][1000 genomes]
rs6048735	1.00[EUR][1000 genomes]
rs6106654	1.00[EUR][1000 genomes]
rs6106670	1.00[EUR][1000 genomes]
rs6114092	1.00[EUR][1000 genomes]
rs6114096	1.00[EUR][1000 genomes]
rs6114099	1.00[EUR][1000 genomes]
rs6114102	1.00[EUR][1000 genomes]
rs6114143	1.00[EUR][1000 genomes]
rs6114148	1.00[EUR][1000 genomes]
rs6114149	1.00[EUR][1000 genomes]
rs7263724	1.00[EUR][1000 genomes]
rs73901804	1.00[EUR][1000 genomes]
rs73901806	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73901807	1.00[EUR][1000 genomes]
rs73901808	1.00[EUR][1000 genomes]
rs73901810	1.00[EUR][1000 genomes]
rs73901812	1.00[EUR][1000 genomes]
rs73901814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901818	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901819	1.00[EUR][1000 genomes]
rs73901821	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901863	1.00[EUR][1000 genomes]
rs73901872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73904260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73904261	1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23316400-23320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23317000-23317800	Flanking Active TSS	HepG2	liver
4	chr20:23317200-23317800	Enhancers	Fetal Intestine Small	intestine
5	chr20:23317200-23318200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:23317200-23321600	Weak transcription	GM12878-XiMat	blood
7	chr20:23317400-23317800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr20:23317400-23318000	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr20:23317600-23318000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:23317600-23318400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr20:23317600-23318400	Enhancers	Cortex derived primary cultured neurospheres	brain

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