Variant report

Variant	rs73901819
Chromosome Location	chr20:23362589-23362590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23344681..23346860-chr20:23360081..23363046,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs36010049	1.00[EUR][1000 genomes]
rs55939409	1.00[EUR][1000 genomes]
rs56122110	1.00[EUR][1000 genomes]
rs56830667	1.00[EUR][1000 genomes]
rs57226979	1.00[EUR][1000 genomes]
rs57368405	1.00[EUR][1000 genomes]
rs57456391	1.00[EUR][1000 genomes]
rs57782497	1.00[EUR][1000 genomes]
rs57842978	1.00[EUR][1000 genomes]
rs58592887	1.00[EUR][1000 genomes]
rs59499588	1.00[EUR][1000 genomes]
rs59893880	1.00[EUR][1000 genomes]
rs60127144	1.00[EUR][1000 genomes]
rs6036425	1.00[EUR][1000 genomes]
rs60394866	1.00[EUR][1000 genomes]
rs6048735	1.00[EUR][1000 genomes]
rs6106654	1.00[EUR][1000 genomes]
rs6106670	1.00[EUR][1000 genomes]
rs6114092	1.00[EUR][1000 genomes]
rs6114096	1.00[EUR][1000 genomes]
rs6114099	1.00[EUR][1000 genomes]
rs6114102	1.00[EUR][1000 genomes]
rs6114143	1.00[EUR][1000 genomes]
rs6114148	1.00[EUR][1000 genomes]
rs6114149	1.00[EUR][1000 genomes]
rs7263724	1.00[EUR][1000 genomes]
rs73901804	1.00[EUR][1000 genomes]
rs73901806	1.00[EUR][1000 genomes]
rs73901807	1.00[EUR][1000 genomes]
rs73901808	1.00[EUR][1000 genomes]
rs73901810	1.00[EUR][1000 genomes]
rs73901812	1.00[EUR][1000 genomes]
rs73901814	1.00[EUR][1000 genomes]
rs73901818	1.00[EUR][1000 genomes]
rs73901821	1.00[EUR][1000 genomes]
rs73901823	1.00[EUR][1000 genomes]
rs73901825	1.00[EUR][1000 genomes]
rs73901827	1.00[EUR][1000 genomes]
rs73901857	1.00[EUR][1000 genomes]
rs73901858	1.00[EUR][1000 genomes]
rs73901861	1.00[EUR][1000 genomes]
rs73901862	1.00[EUR][1000 genomes]
rs73901863	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901872	1.00[EUR][1000 genomes]
rs73901874	1.00[EUR][1000 genomes]
rs73904260	1.00[EUR][1000 genomes]
rs73904261	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448882	chr20:23362387-23362949	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23345000-23362600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr20:23346600-23363200	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr20:23346800-23362600	Weak transcription	Right Atrium	heart
5	chr20:23347800-23362600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:23348000-23374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
8	chr20:23348600-23363000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr20:23348800-23363000	Strong transcription	GM12878-XiMat	blood
10	chr20:23348800-23366400	Strong transcription	Dnd41	blood
11	chr20:23349200-23363000	Strong transcription	Adipose Nuclei	Adipose
12	chr20:23349400-23363200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr20:23349600-23363600	Strong transcription	Liver	Liver
14	chr20:23349600-23366000	Strong transcription	HepG2	liver
15	chr20:23349800-23362800	Strong transcription	Osteobl	bone
16	chr20:23349800-23363000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr20:23349800-23364200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr20:23350000-23363000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr20:23350000-23363600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr20:23350400-23362600	Strong transcription	Placenta	Placenta
21	chr20:23351200-23371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr20:23351200-23374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr20:23351400-23374000	Weak transcription	Fetal Brain Male	brain
24	chr20:23352200-23367800	Weak transcription	Small Intestine	intestine
25	chr20:23352800-23362800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr20:23352800-23376400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr20:23353000-23365400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr20:23353000-23378200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr20:23353400-23372400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr20:23353400-23374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr20:23354400-23389000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr20:23354400-23399800	Weak transcription	Hela-S3	cervix
33	chr20:23354600-23374200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr20:23354600-23375200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr20:23354800-23362800	Weak transcription	Spleen	Spleen
36	chr20:23354800-23371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr20:23354800-23373600	Weak transcription	Colonic Mucosa	Colon
38	chr20:23356600-23365400	Weak transcription	Gastric	stomach
39	chr20:23356600-23374200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr20:23356800-23368800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr20:23357000-23371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr20:23357200-23364200	Strong transcription	A549	lung
43	chr20:23357400-23363200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr20:23357800-23370000	Weak transcription	Brain Substantia Nigra	brain
45	chr20:23358000-23362600	Weak transcription	Psoas Muscle	Psoas
46	chr20:23358000-23366800	Weak transcription	K562	blood
47	chr20:23358000-23371200	Weak transcription	Esophagus	oesophagus
48	chr20:23358000-23371200	Weak transcription	NHEK	skin
49	chr20:23358000-23373600	Weak transcription	Right Ventricle	heart
50	chr20:23358000-23374400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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