Variant report

Variant	rs6048732
Chromosome Location	chr20:23316638-23316639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16985225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17173282	0.92[ASN][1000 genomes]
rs1891686	0.83[AMR][1000 genomes]
rs1891687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3810574	0.87[ASN][1000 genomes]
rs6036385	0.83[AMR][1000 genomes]
rs6048733	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048735	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73901804	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73904259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23313400-23317200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr20:23316200-23317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:23316400-23320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:23316600-23317000	Weak transcription	GM12878-XiMat	blood
7	chr20:23316600-23317600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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