Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1023880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350413	0.84[EUR][1000 genomes]
rs1379712	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1379721	0.87[EUR][1000 genomes]
rs1379722	0.86[EUR][1000 genomes]
rs1458062	0.82[ASN][1000 genomes]
rs17056290	0.80[EUR][1000 genomes]
rs17288665	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1870273	0.81[EUR][1000 genomes]
rs2222248	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28450246	0.81[EUR][1000 genomes]
rs34309011	0.82[EUR][1000 genomes]
rs61532273	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6766861	0.83[EUR][1000 genomes]
rs6780386	0.90[EUR][1000 genomes]
rs6783462	0.84[EUR][1000 genomes]
rs6799706	0.83[EUR][1000 genomes]
rs73084796	0.83[EUR][1000 genomes]
rs73086201	0.80[EUR][1000 genomes]
rs7356061	0.83[EUR][1000 genomes]
rs9818750	1.00[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs9819464	0.83[EUR][1000 genomes]
rs9851203	0.84[EUR][1000 genomes]
rs9878600	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012098	chr3:56040905-56055908	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56041600-56054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56041800-56054000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:56048600-56059000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:56052000-56055200	Enhancers	Brain Germinal Matrix	brain
5	chr3:56052400-56053000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:56052400-56053000	Enhancers	Fetal Brain Male	brain
7	chr3:56052400-56053400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:56052400-56054200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:56052600-56054800	Enhancers	Fetal Heart	heart
10	chr3:56052600-56055000	Enhancers	Ovary	ovary
11	chr3:56052600-56055200	Enhancers	Fetal Stomach	stomach
12	chr3:56052800-56053000	Enhancers	HUES6 Cell Line	embryonic stem cell

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