Variant report

Variant	rs1379721
Chromosome Location	chr3:56023625-56023626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1023880	0.87[EUR][1000 genomes]
rs11713317	0.83[EUR][1000 genomes]
rs12635043	0.82[EUR][1000 genomes]
rs12635074	0.82[EUR][1000 genomes]
rs12635403	0.81[EUR][1000 genomes]
rs1350413	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1379712	0.83[EUR][1000 genomes]
rs1379722	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1585225	0.83[EUR][1000 genomes]
rs17056290	0.85[EUR][1000 genomes]
rs17288665	0.87[EUR][1000 genomes]
rs1870273	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1914865	0.91[EUR][1000 genomes]
rs2168817	0.81[EUR][1000 genomes]
rs2219415	0.91[EUR][1000 genomes]
rs2222248	0.82[EUR][1000 genomes]
rs28450246	0.90[EUR][1000 genomes]
rs2873081	0.91[EUR][1000 genomes]
rs34309011	0.87[EUR][1000 genomes]
rs3816575	0.87[EUR][1000 genomes]
rs58120479	0.82[EUR][1000 genomes]
rs59791683	0.80[EUR][1000 genomes]
rs60677507	0.81[EUR][1000 genomes]
rs61532273	0.82[EUR][1000 genomes]
rs6766861	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6780386	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6783462	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6799706	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73084796	0.88[EUR][1000 genomes]
rs73086151	0.82[EUR][1000 genomes]
rs73086153	0.81[EUR][1000 genomes]
rs73086154	0.82[EUR][1000 genomes]
rs73086189	0.85[EUR][1000 genomes]
rs73086201	0.86[EUR][1000 genomes]
rs7356061	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9809605	0.91[EUR][1000 genomes]
rs9819464	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9827086	0.91[EUR][1000 genomes]
rs9851203	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9878600	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56021400-56028200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56021400-56034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56022200-56023800	Enhancers	Fetal Stomach	stomach
4	chr3:56022600-56023800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:56022600-56028200	Weak transcription	Fetal Kidney	kidney
6	chr3:56023000-56023800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:56023400-56032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:56023600-56024600	Weak transcription	Ovary	ovary
9	chr3:56023600-56026800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:56023600-56028000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:56023600-56028200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:56023600-56034600	Weak transcription	H1 Cell Line	embryonic stem cell

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