Variant report

Variant	rs11713317
Chromosome Location	chr3:55989938-55989939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11130487	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11714745	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11717249	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12635043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12635074	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12635403	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350413	0.81[EUR][1000 genomes]
rs1379721	0.83[EUR][1000 genomes]
rs1379722	0.84[EUR][1000 genomes]
rs1585225	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17056290	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17288603	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1870273	0.83[EUR][1000 genomes]
rs1914865	0.80[EUR][1000 genomes]
rs2168817	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2219415	0.80[EUR][1000 genomes]
rs34309011	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58092526	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58120479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59791683	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60677507	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766861	0.81[EUR][1000 genomes]
rs6780386	0.81[EUR][1000 genomes]
rs6783462	0.81[EUR][1000 genomes]
rs6799706	0.81[EUR][1000 genomes]
rs73084796	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73086151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086153	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086189	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73086201	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7356061	0.81[EUR][1000 genomes]
rs9809605	0.80[EUR][1000 genomes]
rs9819464	0.81[EUR][1000 genomes]
rs9827086	0.80[EUR][1000 genomes]
rs9851203	0.82[EUR][1000 genomes]
rs9878600	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv999867	chr3:55953433-56000627	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55969600-55991600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:55981600-55990000	Weak transcription	Fetal Lung	lung
3	chr3:55988000-55991600	Weak transcription	Gastric	stomach
4	chr3:55989800-55990000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:55989800-55990400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:55989800-55990800	Enhancers	Ovary	ovary

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