Variant report

Variant	rs73086201
Chromosome Location	chr3:56007958-56007959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56007673..56009341-chr3:56015125..56017166,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1023880	0.80[EUR][1000 genomes]
rs11713317	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11717249	0.84[AMR][1000 genomes]
rs12635043	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12635074	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12635403	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1350413	0.84[EUR][1000 genomes]
rs1379721	0.86[EUR][1000 genomes]
rs1379722	0.86[EUR][1000 genomes]
rs1585225	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17056290	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17288665	0.82[EUR][1000 genomes]
rs1870273	0.85[EUR][1000 genomes]
rs1914865	0.83[EUR][1000 genomes]
rs2168817	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2219415	0.82[EUR][1000 genomes]
rs28450246	0.82[EUR][1000 genomes]
rs2873081	0.82[EUR][1000 genomes]
rs34309011	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3816575	0.80[EUR][1000 genomes]
rs58092526	0.82[AMR][1000 genomes]
rs58120479	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59791683	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60677507	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6766861	0.83[EUR][1000 genomes]
rs6780386	0.84[EUR][1000 genomes]
rs6783462	0.84[EUR][1000 genomes]
rs6799706	0.83[EUR][1000 genomes]
rs73084796	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73086151	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73086153	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73086154	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73086189	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7356061	0.83[EUR][1000 genomes]
rs9809605	0.83[EUR][1000 genomes]
rs9819464	0.83[EUR][1000 genomes]
rs9827086	0.83[EUR][1000 genomes]
rs9851203	0.84[EUR][1000 genomes]
rs9878600	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv967218	chr3:56005506-56012261	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55993000-56009600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56003800-56017000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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