Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11713317	0.80[EUR][1000 genomes]
rs1350413	0.94[EUR][1000 genomes]
rs1379721	0.91[EUR][1000 genomes]
rs1379722	0.91[EUR][1000 genomes]
rs17056290	0.82[EUR][1000 genomes]
rs17288665	0.80[EUR][1000 genomes]
rs1870273	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1914865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28450246	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2873081	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34309011	0.83[EUR][1000 genomes]
rs6766861	0.95[EUR][1000 genomes]
rs6780386	0.88[EUR][1000 genomes]
rs6783462	0.94[EUR][1000 genomes]
rs6799706	0.95[EUR][1000 genomes]
rs73084796	0.83[EUR][1000 genomes]
rs73086189	0.82[EUR][1000 genomes]
rs73086201	0.83[EUR][1000 genomes]
rs7356061	0.95[EUR][1000 genomes]
rs9809605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819464	0.95[EUR][1000 genomes]
rs9851203	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9878600	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56021400-56034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56023400-56032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56023600-56034600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:56023800-56032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:56025000-56029800	Weak transcription	Ovary	ovary
6	chr3:56028200-56029000	Enhancers	Fetal Kidney	kidney
7	chr3:56028400-56032800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:56028600-56032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:56028600-56032600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:56028600-56032800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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