Variant report

Variant	rs6799706
Chromosome Location	chr3:56017816-56017817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56011518..56013097-chr3:56017177..56019387,2	K562	blood:
2	chr17:41466667..41468271-chr3:56017527..56019047,2	K562	blood:
3	chr17:41399537..41402518-chr3:56017547..56020527,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1023880	0.83[EUR][1000 genomes]
rs11713317	0.81[EUR][1000 genomes]
rs1350413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1379721	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1379722	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1585225	0.80[EUR][1000 genomes]
rs17056290	0.82[EUR][1000 genomes]
rs17288665	0.83[EUR][1000 genomes]
rs1870273	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1914865	0.95[EUR][1000 genomes]
rs2219415	0.95[EUR][1000 genomes]
rs28450246	0.94[EUR][1000 genomes]
rs2873081	0.93[EUR][1000 genomes]
rs34309011	0.83[EUR][1000 genomes]
rs3816575	0.83[EUR][1000 genomes]
rs6766861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6780386	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6783462	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73084796	0.85[EUR][1000 genomes]
rs73086153	0.80[EUR][1000 genomes]
rs73086189	0.83[EUR][1000 genomes]
rs73086201	0.83[EUR][1000 genomes]
rs7356061	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809605	0.95[EUR][1000 genomes]
rs9819464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827086	0.95[EUR][1000 genomes]
rs9851203	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9878600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:56013200-56022200	Weak transcription	Pancreas	Pancrea
3	chr3:56015800-56020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:56015800-56020600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:56017200-56018400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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