Variant report

Variant	rs1585225
Chromosome Location	chr3:55992812-55992813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11130487	0.84[ASN][1000 genomes]
rs11713317	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11714745	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11717249	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12635043	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635074	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12635403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1350413	0.81[EUR][1000 genomes]
rs1379721	0.83[EUR][1000 genomes]
rs1379722	0.83[EUR][1000 genomes]
rs17056290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17288603	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1870273	0.82[EUR][1000 genomes]
rs2168817	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34309011	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58092526	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58120479	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59791683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60677507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6766861	0.80[EUR][1000 genomes]
rs6780386	0.81[EUR][1000 genomes]
rs6783462	0.81[EUR][1000 genomes]
rs6799706	0.80[EUR][1000 genomes]
rs73084796	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73086151	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73086153	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73086154	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73086189	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73086201	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7356061	0.80[EUR][1000 genomes]
rs9819464	0.80[EUR][1000 genomes]
rs9851203	0.81[EUR][1000 genomes]
rs9878600	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv999867	chr3:55953433-56000627	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55992400-55994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:55992600-55993000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:55992600-55993000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr3:55992600-55993200	Enhancers	Fetal Muscle Leg	muscle
5	chr3:55992600-55994400	Enhancers	Ovary	ovary
6	chr3:55992800-55994200	Enhancers	Fetal Lung	lung

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