Variant report

Variant rs3816996
Chromosome Location chr5:58271240-58271241
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58262400-58273400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr5:58263200-58271400 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr5:58265600-58276600 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr5:58265800-58276200 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr5:58266000-58287600 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr5:58266800-58281200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr5:58267400-58273000 Strong transcription Hela-S3 cervix
8 chr5:58267600-58280000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr5:58267600-58282600 Strong transcription Primary T cells from cord blood blood
10 chr5:58267800-58276000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr5:58268000-58273800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:58268000-58278000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr5:58268000-58281800 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr5:58268000-58288400 Weak transcription Stomach Mucosa stomach
15 chr5:58268200-58280400 Strong transcription Primary T helper cells fromperipheralblood blood
16 chr5:58268200-58287200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr5:58268400-58274000 Weak transcription Primary B cells from peripheral blood blood
18 chr5:58268400-58275400 Strong transcription Fetal Thymus thymus
19 chr5:58268400-58287400 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr5:58268400-58294400 Weak transcription NH-A brain
21 chr5:58268600-58272000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:58268600-58272600 Weak transcription NHDF-Ad bronchial
23 chr5:58268600-58275600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr5:58268600-58279400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr5:58268600-58279600 Strong transcription Primary neutrophils fromperipheralblood blood
26 chr5:58268800-58272800 Strong transcription HUVEC blood vessel
27 chr5:58268800-58273400 Strong transcription Fetal Intestine Large intestine
28 chr5:58268800-58273400 Strong transcription Right Ventricle heart
29 chr5:58268800-58274000 Strong transcription Rectal Mucosa Donor 31 rectum
30 chr5:58268800-58275800 Strong transcription HSMM muscle
31 chr5:58268800-58280000 Strong transcription Rectal Mucosa Donor 29 rectum
32 chr5:58268800-58280200 Strong transcription Primary T cells fromperipheralblood blood
33 chr5:58268800-58286000 Weak transcription HepG2 liver
34 chr5:58268800-58286600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
35 chr5:58268800-58286800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr5:58268800-58287200 Strong transcription Primary T helper cells PMA-I stimulated --
37 chr5:58268800-58287800 Weak transcription Placenta Placenta
38 chr5:58268800-58288800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
39 chr5:58268800-58294600 Weak transcription Brain Hippocampus Middle brain
40 chr5:58269000-58272000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr5:58269000-58273200 Strong transcription Fetal Lung lung
42 chr5:58269000-58273200 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr5:58269000-58273600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr5:58269000-58273800 Strong transcription Colon Smooth Muscle Colon
45 chr5:58269000-58274000 Strong transcription Duodenum Smooth Muscle Duodenum
46 chr5:58269000-58274000 Strong transcription Placenta Amnion Placenta Amnion
47 chr5:58269000-58274000 Strong transcription Skeletal Muscle Male skeletal muscle
48 chr5:58269000-58279400 Strong transcription Primary hematopoietic stem cells blood
49 chr5:58269200-58271600 Weak transcription Ovary ovary
50 chr5:58269200-58272600 Weak transcription Colonic Mucosa Colon

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