Variant report

Variant	rs10060863
Chromosome Location	chr5:58229119-58229120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10042327	0.86[AMR][1000 genomes]
rs10043483	1.00[AFR][1000 genomes]
rs10045533	0.86[AMR][1000 genomes]
rs10052111	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10053774	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10054649	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10057869	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10058291	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10059024	0.86[AMR][1000 genomes]
rs10059107	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066704	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10076213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328128	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328141	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13354132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13360226	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13360939	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16888833	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17290147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28430615	1.00[AFR][1000 genomes]
rs28673893	0.86[AMR][1000 genomes]
rs34791515	0.86[AMR][1000 genomes]
rs3816996	0.86[AMR][1000 genomes]
rs57337307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58705088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59942820	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58222600-58230200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:58223000-58229600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:58224200-58229400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:58224200-58229600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:58224200-58229800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:58224200-58230200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:58226600-58229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:58226800-58229400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:58226800-58229400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:58227800-58229400	Enhancers	Primary T cells from cord blood	blood
11	chr5:58228000-58230200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:58228200-58229800	Flanking Active TSS	A549	lung
13	chr5:58228200-58230400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:58228200-58231200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:58228200-58231200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:58228400-58229800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:58228400-58230000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:58229000-58230200	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links