Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10052111	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053774	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054649	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057869	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058291	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059107	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060863	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066704	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076213	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328128	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328141	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888833	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805555	0.82[JPT][hapmap]
rs3816996	1.00[CEU][hapmap]
rs57337307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58705088	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59942820	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58206400-58216400	Weak transcription	Psoas Muscle	Psoas
2	chr5:58209600-58212400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:58210000-58213400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:58210000-58218600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:58210200-58212200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:58210200-58212200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:58210600-58216400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:58211200-58216600	Weak transcription	Right Atrium	heart
9	chr5:58211800-58213800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr5:58212000-58216600	Weak transcription	Left Ventricle	heart
11	chr5:58212000-58218400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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