Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10052111	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053774	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054649	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057869	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060863	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066704	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076213	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328128	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328141	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360226	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360939	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888833	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290147	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805555	0.82[JPT][hapmap]
rs3816996	1.00[CEU][hapmap]
rs57337307	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58705088	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59942820	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58187800-58198200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:58188000-58196400	Weak transcription	HSMMtube	muscle
3	chr5:58193400-58195200	Enhancers	A549	lung
4	chr5:58193800-58195200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:58194000-58195400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:58194000-58198000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:58194600-58196400	Weak transcription	Fetal Heart	heart
8	chr5:58194600-58198200	Weak transcription	Psoas Muscle	Psoas
9	chr5:58194800-58197600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:58194800-58198000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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