Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAB3C-4	chr5:58188886-58190976	ucscGeneNc_uc003jrq_2

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10052111	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053774	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057869	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058291	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059107	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060863	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066704	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076213	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328128	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328141	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354132	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360226	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360939	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888833	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290147	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805555	0.82[JPT][hapmap]
rs3816996	1.00[CEU][hapmap]
rs57337307	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58705088	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59942820	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58184400-58190800	Weak transcription	Psoas Muscle	Psoas
2	chr5:58186800-58193600	Weak transcription	Right Atrium	heart
3	chr5:58187800-58191000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:58187800-58198200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:58188000-58193400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:58188000-58196400	Weak transcription	HSMMtube	muscle
7	chr5:58188200-58193600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:58189400-58191800	Weak transcription	Hela-S3	cervix
9	chr5:58190000-58193400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:58190200-58190800	Weak transcription	A549	lung
11	chr5:58190200-58193800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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