Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10052111	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054649	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057869	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060863	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066704	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076213	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328128	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328141	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354132	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360226	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360359	0.85[JPT][hapmap]
rs13360939	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888833	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290147	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816996	1.00[CEU][hapmap]
rs57337307	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58705088	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59942820	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869400	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58186800-58193600	Weak transcription	Right Atrium	heart
2	chr5:58187800-58198200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:58188000-58193400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:58188000-58196400	Weak transcription	HSMMtube	muscle
5	chr5:58188200-58193600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:58190000-58193400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:58190200-58193800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:58191200-58193800	Weak transcription	Psoas Muscle	Psoas
9	chr5:58191600-58193400	Weak transcription	A549	lung
10	chr5:58191800-58193000	Enhancers	Hela-S3	cervix
11	chr5:58192000-58193600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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