Variant report

Variant	rs13360939
Chromosome Location	chr5:58213901-58213902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10042327	0.81[AMR][1000 genomes]
rs10045533	0.81[AMR][1000 genomes]
rs10052111	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053774	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054649	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057869	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058291	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059024	0.81[AMR][1000 genomes]
rs10059107	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060863	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10066704	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076213	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328128	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328141	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354132	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360226	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888833	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17290147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673893	0.81[AMR][1000 genomes]
rs34791515	0.81[AMR][1000 genomes]
rs3816996	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs57337307	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58705088	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59942820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61420313	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58206400-58216400	Weak transcription	Psoas Muscle	Psoas
2	chr5:58210000-58218600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:58210600-58216400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:58211200-58216600	Weak transcription	Right Atrium	heart
5	chr5:58212000-58216600	Weak transcription	Left Ventricle	heart
6	chr5:58212000-58218400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:58212400-58214000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:58212600-58215400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:58212800-58215200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:58213000-58214200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:58213000-58215400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:58213200-58214800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:58213200-58215400	Weak transcription	Fetal Heart	heart
14	chr5:58213200-58216600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:58213200-58221200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:58213400-58214200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr5:58213400-58214600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:58213400-58218800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:58213600-58214200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:58213600-58215200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:58213800-58214600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr5:58213800-58215400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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