Variant report

Variant	rs61420313
Chromosome Location	chr5:58212681-58212682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13360939	0.92[AFR][1000 genomes]
rs56893478	1.00[AMR][1000 genomes]
rs57184260	1.00[AMR][1000 genomes]
rs57378186	1.00[AMR][1000 genomes]
rs57671468	1.00[AMR][1000 genomes]
rs58202352	1.00[AMR][1000 genomes]
rs59551754	1.00[AMR][1000 genomes]
rs59942820	0.92[AFR][1000 genomes]
rs60980897	1.00[AMR][1000 genomes]
rs61662978	1.00[AMR][1000 genomes]
rs6863457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58206400-58216400	Weak transcription	Psoas Muscle	Psoas
2	chr5:58210000-58213400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:58210000-58218600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:58210600-58216400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:58211200-58216600	Weak transcription	Right Atrium	heart
6	chr5:58211800-58213800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr5:58212000-58216600	Weak transcription	Left Ventricle	heart
8	chr5:58212000-58218400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:58212200-58213200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:58212200-58213400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:58212400-58212800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:58212400-58213200	Enhancers	Fetal Heart	heart
13	chr5:58212400-58213400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr5:58212400-58214000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:58212600-58212800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:58212600-58213200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:58212600-58213200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:58212600-58215400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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