Variant report

Variant	rs6863457
Chromosome Location	chr5:58153923-58153924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56893478	1.00[AMR][1000 genomes]
rs57184260	1.00[AMR][1000 genomes]
rs57378186	1.00[AMR][1000 genomes]
rs57671468	1.00[AMR][1000 genomes]
rs58202352	1.00[AMR][1000 genomes]
rs59551754	1.00[AMR][1000 genomes]
rs60980897	1.00[AMR][1000 genomes]
rs61420313	1.00[AMR][1000 genomes]
rs61662978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58149600-58155600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:58150600-58156000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:58152400-58154000	Enhancers	Stomach Mucosa	stomach
4	chr5:58152600-58155600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58153800-58156600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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