Variant report

Variant	rs58202352
Chromosome Location	chr5:58178697-58178698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56893478	1.00[AMR][1000 genomes]
rs57184260	1.00[AMR][1000 genomes]
rs57378186	1.00[AMR][1000 genomes]
rs57671468	1.00[AMR][1000 genomes]
rs59551754	1.00[AMR][1000 genomes]
rs60980897	1.00[AMR][1000 genomes]
rs61420313	1.00[AMR][1000 genomes]
rs61662978	1.00[AMR][1000 genomes]
rs6863457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58168600-58182200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:58176200-58183800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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