Variant report

Variant	rs57378186
Chromosome Location	chr5:58234385-58234386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56893478	1.00[AMR][1000 genomes]
rs57184260	1.00[AMR][1000 genomes]
rs57671468	1.00[AMR][1000 genomes]
rs58202352	1.00[AMR][1000 genomes]
rs59551754	1.00[AMR][1000 genomes]
rs60980897	1.00[AMR][1000 genomes]
rs61420313	1.00[AMR][1000 genomes]
rs61662978	1.00[AMR][1000 genomes]
rs6859693	0.93[AFR][1000 genomes]
rs6863457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58230800-58236200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:58230800-58236200	Weak transcription	HSMM	muscle
3	chr5:58231000-58235600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:58231000-58235800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:58231000-58236200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:58231200-58235600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:58231200-58236000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:58231200-58236200	Weak transcription	Osteobl	bone
9	chr5:58232400-58234800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr5:58232600-58234400	Active TSS	K562	blood
11	chr5:58232800-58234600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr5:58232800-58234800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr5:58233200-58236400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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