Variant report

Variant	rs61662978
Chromosome Location	chr5:58197794-58197795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56893478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57184260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378186	1.00[AMR][1000 genomes]
rs57671468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58202352	1.00[AMR][1000 genomes]
rs59551754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60980897	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61420313	1.00[AMR][1000 genomes]
rs6863457	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58187800-58198200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:58194000-58198000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:58194600-58198200	Weak transcription	Psoas Muscle	Psoas
4	chr5:58194800-58198000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:58195200-58201600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:58197200-58199200	Enhancers	A549	lung
7	chr5:58197600-58199000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:58197600-58199000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links