Variant report

Variant	rs3849279
Chromosome Location	chr1:150944707-150944708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:162)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:162 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:150944700-150944850	HBMEC	blood vessel:	n/a	n/a
2	MAX	chr1:150943251-150948012	MCF-7	breast:	n/a	chr1:150946541-150946551 chr1:150947366-150947376 chr1:150944384-150944393 chr1:150946655-150946664
3	POLR2A	chr1:150944208-150945014	K562	blood:	n/a	n/a
4	TCF12	chr1:150944173-150944917	ECC-1	luminal epithelium:	n/a	chr1:150944592-150944599 chr1:150944850-150944860
5	ELF1	chr1:150944421-150944769	K562	blood:	n/a	chr1:150944608-150944619 chr1:150944606-150944619
6	POLR2A	chr1:150944459-150945426	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr1:150944680-150944830	HMF	breast:	n/a	n/a
8	CTCF	chr1:150944700-150944850	BJ	skin:	n/a	n/a
9	CTCF	chr1:150944660-150944810	BE2_C	brain:	n/a	n/a
10	NR2F2	chr1:150943257-150945619	MCF-7	breast:	n/a	n/a
11	ZNF263	chr1:150944461-150946776	HEK293-T-REx	kidney:	n/a	chr1:150945506-150945515
12	POLR2A	chr1:150944679-150944982	U87	brain:	n/a	n/a
13	CTCF	chr1:150944680-150944830	GM12871	blood:	n/a	n/a
14	YY1	chr1:150944690-150944891	K562	blood:	n/a	n/a
15	CTCF	chr1:150944660-150944810	HRPEpiC	eye:	n/a	n/a
16	CTCF	chr1:150944580-150944850	HCT-116	colon:	n/a	n/a
17	CTCF	chr1:150944700-150944850	HCFaa	heart:	n/a	n/a
18	POLR2A	chr1:150943397-150945192	HepG2	liver:	n/a	n/a
19	RAD21	chr1:150944353-150944826	HepG2	liver:	n/a	n/a
20	CTCF	chr1:150944680-150944830	GM12867	blood:	n/a	n/a
21	TEAD4	chr1:150943522-150944892	HepG2	liver:	n/a	chr1:150944024-150944033
22	CTCF	chr1:150944680-150944830	A549	lung:	n/a	n/a
23	CTCF	chr1:150944469-150945047	K562	blood:	n/a	chr1:150944496-150944505
24	CTCF	chr1:150944573-150944951	K562	blood:	n/a	n/a
25	CTCF	chr1:150944359-150944880	HepG2	liver:	n/a	chr1:150944496-150944505
26	BHLHE40	chr1:150943467-150945102	HepG2	liver:	n/a	chr1:150944854-150944870
27	RCOR1	chr1:150944706-150945234	K562	blood:	n/a	n/a
28	POLR2A	chr1:150942736-150945363	MCF-7	breast:	n/a	n/a
29	CTCF	chr1:150944700-150944850	HCPEpiC	choroid plexus:	n/a	n/a
30	CHD2	chr1:150944521-150944711	HepG2	liver:	n/a	n/a
31	SMC3	chr1:150943546-150944789	HepG2	liver:	n/a	chr1:150944740-150944748
32	JUND	chr1:150944563-150944982	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAX	chr1:150943391-150945406	MCF-7	breast:	n/a	chr1:150944384-150944393
34	POLR2A	chr1:150944663-150944920	Hela-S3	cervix:	n/a	n/a
35	ZBTB7A	chr1:150944640-150944934	K562	blood:	n/a	n/a
36	CTCF	chr1:150944520-150944810	GM12867	blood:	n/a	n/a
37	NFIC	chr1:150943640-150944970	HepG2	liver:	n/a	n/a
38	RAD21	chr1:150943602-150944896	HepG2	liver:	n/a	chr1:150944854-150944867
39	EP300	chr1:150943492-150944779	HepG2	liver:	n/a	n/a
40	POLR2A	chr1:150944201-150945055	K562	blood:	n/a	n/a
41	ZBTB7A	chr1:150944680-150944827	HepG2	liver:	n/a	n/a
42	CTCF	chr1:150944680-150944830	HPF	lung:	n/a	n/a
43	MYBL2	chr1:150943578-150944869	HepG2	liver:	n/a	n/a
44	CTCF	chr1:150944680-150944830	HEK293	kidney:	n/a	n/a
45	CTCF	chr1:150944640-150944790	GM12870	blood:	n/a	n/a
46	MXI1	chr1:150943226-150945340	IMR90	lung:	n/a	n/a
47	HEY1	chr1:150943571-150945409	HepG2	liver:	n/a	n/a
48	MAX	chr1:150944300-150944793	ECC-1	luminal epithelium:	n/a	chr1:150944384-150944393
49	POLR2A	chr1:150944167-150944743	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr1:150943469-150944977	HepG2	liver:	n/a	n/a

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150847731..150849909-chr1:150942826..150945486,2	K562	blood:
2	chr1:150942078..150949693-chr1:150976791..150984782,24	MCF-7	breast:
3	chr1:150944160..150945692-chr1:151732521..151735210,2	K562	blood:
4	chr1:150532877..150534407-chr1:150944654..150947502,2	MCF-7	breast:
5	chr1:150942864..150945406-chr17:56708894..56710724,2	MCF-7	breast:
6	chr1:150942445..150944747-chr16:88921048..88924029,2	MCF-7	breast:
7	chr1:150942596..150945124-chr1:151020280..151022010,2	MCF-7	breast:
8	chr1:150944222..150949507-chr1:150975860..150982521,8	K562	blood:
9	chr1:150551378..150553300-chr1:150944488..150946159,2	MCF-7	breast:
10	chr1:150944409..150948293-chr1:150968315..150970666,3	MCF-7	breast:
11	chr1:150667811..150671175-chr1:150944483..150949055,4	MCF-7	breast:
12	chr1:150532195..150535413-chr1:150944658..150948005,3	MCF-7	breast:
13	chr1:150944568..150948169-chr1:151041647..151044581,4	MCF-7	breast:
14	chr1:150943422..150945892-chr1:151029810..151031687,2	MCF-7	breast:
15	chr1:150942867..150944822-chr1:150945093..150947347,2	K562	blood:
16	chr1:150943930..150948676-chr1:151041268..151044275,5	MCF-7	breast:
17	chr1:150846616..150850276-chr1:150942456..150948926,7	MCF-7	breast:
18	chr1:150942330..150945189-chr13:31190945..31193685,2	MCF-7	breast:
19	chr1:150943913..150947004-chr1:151018258..151022109,4	MCF-7	breast:

No data

Variant related genes	Relation type
CERS2	TF binding region
ENSG00000231073	TF binding region
ENSG00000212195	Chromatin interaction
ENSG00000143458	Chromatin interaction
ENSG00000189403	Chromatin interaction
ENSG00000141012	Chromatin interaction
ENSG00000203804	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000197622	Chromatin interaction
ENSG00000143443	Chromatin interaction
ENSG00000132952	Chromatin interaction
ENSG00000143437	Chromatin interaction
ENSG00000231073	Chromatin interaction
ENSG00000167515	Chromatin interaction
ENSG00000143409	Chromatin interaction
ENSG00000143418	Chromatin interaction
ENSG00000143457	Chromatin interaction
ENSG00000213190	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000143363	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 40 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10305704	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs10305711	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs10305714	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs10399947	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10888394	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap]
rs10888395	0.81[EUR][1000 genomes]
rs10888397	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10888398	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11204739	0.83[ASN][1000 genomes]
rs11204742	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11204743	0.87[ASN][1000 genomes]
rs11204747	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11204748	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11204749	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11204750	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11552229	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs11579736	0.85[EUR][1000 genomes]
rs11581757	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11583707	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11589886	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11800855	0.82[EUR][1000 genomes]
rs12059949	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12067685	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12075597	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12085336	1.00[CEU][hapmap];0.82[GIH][hapmap];0.81[EUR][1000 genomes]
rs12090215	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12096831	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs12097963	0.83[ASN][1000 genomes]
rs12119409	0.81[CHB][hapmap]
rs12141871	0.81[CHB][hapmap]
rs12145224	0.82[CHB][hapmap]
rs12405726	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12409208	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs12410869	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12562939	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1546376	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889740	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1889741	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1972060	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2004903	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2124952	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2228099	1.00[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2256355	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2271076	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2272214	0.88[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2280627	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2864873	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2864882	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2867296	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2867297	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34985895	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36008098	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3768013	1.00[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs3768015	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs3768016	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs3843843	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4451553	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4509581	0.95[CEU][hapmap]
rs4970928	0.84[ASN][1000 genomes]
rs4970929	0.88[ASN][1000 genomes]
rs4970930	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4970931	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4970980	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4970982	0.83[ASN][1000 genomes]
rs4970984	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4970985	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4970986	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4970987	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4970988	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59024312	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6587542	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6658066	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6664622	0.81[CHB][hapmap]
rs6669855	0.81[EUR][1000 genomes]
rs6677420	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66847267	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6686064	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72704656	0.82[EUR][1000 genomes]
rs72704679	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72704682	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72704685	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7514004	0.82[EUR][1000 genomes]
rs7518156	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs752376	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7528773	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7532045	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs7556451	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7556661	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8444	0.88[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs897815	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9661876	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv522317	chr1:150933723-150974162	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases

mRNA abundance (count:40)

SNP	Gene	Cis/trans	Tissue	Source
rs3849279	RP11-316M1.12	cis	Esophagus Muscularis	GTEx
rs3849279	RP11-98D18.3	cis	Esophagus Mucosa	GTEx
rs3849279	CD160	cis	parietal	SCAN
rs3849279	CTSK	Cis_1M	lymphoblastoid	RTeQTL
rs3849279	CTSS	cis	cerebellum	SCAN
rs3849279	HORMAD1	cis	parietal	SCAN
rs3849279	HFE2	cis	parietal	SCAN
rs3849279	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs3849279	PSMD4	cis	parietal	SCAN
rs3849279	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs3849279	CTSK	cis	cerebellum	SCAN
rs3849279	RP11-316M1.12	cis	lung	GTEx
rs3849279	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs3849279	RP11-316M1.12	cis	Artery Aorta	GTEx
rs3849279	RP11-316M1.12	cis	Thyroid	GTEx
rs3849279	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs3849279	HORMAD1	cis	Esophagus Mucosa	GTEx
rs3849279	HORMAD1	cis	Nerve Tibial	GTEx
rs3849279	ARNT	cis	parietal	SCAN
rs3849279	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs3849279	RP11-316M1.12	cis	Artery Tibial	GTEx
rs3849279	RORC	cis	parietal	SCAN
rs3849279	CA14	cis	cerebellum	SCAN
rs3849279	CTSS	cis	parietal	SCAN
rs3849279	ARNT	Cis_1M	lymphoblastoid	RTeQTL
rs3849279	GOLPH3L	cis	Nerve Tibial	GTEx
rs3849279	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs3849279	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs3849279	GNRHR2	cis	cerebellum	SCAN
rs3849279	CTSS	cis	Thyroid	GTEx
rs3849279	CTSS	Cis_1M	lymphoblastoid	RTeQTL
rs3849279	RP11-316M1.12	cis	Skin Sun Exposed Lower leg	GTEx
rs3849279	ARNT	cis	cerebellum	SCAN
rs3849279	HORMAD1	cis	cerebellum	SCAN
rs3849279	CTSS	cis	lymphoblastoid	seeQTL
rs3849279	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs3849279	CTSS	cis	multi-tissue	Pritchard
rs3849279	CTSK	cis	parietal	SCAN
rs3849279	RP11-316M1.12	cis	Whole Blood	GTEx
rs3849279	RP11-316M1.12	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150940400-150945200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:150940800-150945200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:150941800-150944800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:150941800-150945000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:150942600-150945400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:150942600-150945600	Enhancers	Placenta	Placenta
7	chr1:150942800-150945000	Genic enhancers	Fetal Muscle Leg	muscle
8	chr1:150942800-150945000	Enhancers	Right Atrium	heart
9	chr1:150942800-150945200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:150942800-150945200	Genic enhancers	Fetal Stomach	stomach
11	chr1:150942800-150945600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:150942800-150945800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:150942800-150945800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:150942800-150945800	Enhancers	Ovary	ovary
15	chr1:150942800-150946000	Flanking Active TSS	Liver	Liver
16	chr1:150942800-150946400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:150943000-150944800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr1:150943000-150944800	Enhancers	Fetal Heart	heart
19	chr1:150943000-150945000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr1:150943000-150945000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr1:150943000-150945000	Enhancers	Left Ventricle	heart
22	chr1:150943000-150945200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:150943000-150945200	Enhancers	Right Ventricle	heart
24	chr1:150943000-150945400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr1:150943000-150945600	Enhancers	Psoas Muscle	Psoas
26	chr1:150943000-150945800	Enhancers	Esophagus	oesophagus
27	chr1:150943000-150946000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr1:150943000-150946000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:150943200-150944800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr1:150943200-150944800	Enhancers	HSMMtube	muscle
31	chr1:150943200-150945000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:150943200-150945200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:150943200-150945800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:150943200-150945800	Enhancers	Primary B cells from peripheral blood	blood
35	chr1:150943200-150945800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr1:150943200-150946000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr1:150943200-150946200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr1:150943200-150946400	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr1:150943200-150946400	Flanking Active TSS	Osteobl	bone
40	chr1:150943400-150945000	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr1:150943400-150945200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:150943400-150945400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:150943400-150945400	Enhancers	Primary T cells from cord blood	blood
44	chr1:150943400-150945600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:150943400-150945600	Flanking Active TSS	NHDF-Ad	bronchial
46	chr1:150943400-150945800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:150943400-150945800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:150943400-150945800	Enhancers	Placenta Amnion	Placenta Amnion
49	chr1:150943400-150946000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:150943400-150946000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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