Variant report

Variant	rs3768013
Chromosome Location	chr1:150815411-150815412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150813417..150816056-chr1:150946516..150948387,2	K562	blood:
2	chr1:150800531..150803502-chr1:150811550..150815655,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143437	Chromatin interaction
ENSG00000143418	Chromatin interaction

Extended variants
information (count: 158 )
Associated
traits (count: 42 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1027699	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10305664	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10305667	0.82[ASN][1000 genomes]
rs10305672	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10305673	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10305704	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10305711	0.84[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10305714	0.87[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10305720	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10399947	0.89[EUR][1000 genomes]
rs10788792	0.91[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap]
rs10788794	0.87[EUR][1000 genomes]
rs10888391	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs10888392	0.87[EUR][1000 genomes]
rs10888393	0.81[EUR][1000 genomes]
rs10888394	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs10888395	0.91[EUR][1000 genomes]
rs10888397	0.88[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs10888398	1.00[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs11204691	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11204697	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs11204698	0.91[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs11204704	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs11204722	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs11204723	0.81[EUR][1000 genomes]
rs11204726	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs11204733	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11204739	0.85[EUR][1000 genomes]
rs11204742	0.83[EUR][1000 genomes]
rs11204747	0.84[EUR][1000 genomes]
rs11204748	0.84[EUR][1000 genomes]
rs11204749	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1136808	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11552229	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11581757	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs11582281	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11586422	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs11587444	0.91[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs11589458	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11589886	0.87[EUR][1000 genomes]
rs11800855	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11803569	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs11803940	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11804276	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11807409	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11807450	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs12063547	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs12072339	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs12075597	0.87[EUR][1000 genomes]
rs12085336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12086472	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs12089989	0.83[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap]
rs12090215	0.84[EUR][1000 genomes]
rs12096831	0.86[EUR][1000 genomes]
rs12097963	0.85[EUR][1000 genomes]
rs12403255	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs12406660	0.82[ASN][1000 genomes]
rs12409208	0.88[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs12410394	0.86[EUR][1000 genomes]
rs12410869	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs1336899	0.91[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs1336900	0.91[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs1415148	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs1532770	0.86[EUR][1000 genomes]
rs16827671	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs17658705	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs17660092	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1889740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1889741	1.00[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs1972060	0.83[EUR][1000 genomes]
rs2089082	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124952	0.88[CEU][hapmap]
rs2184833	0.91[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs2228099	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2256355	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2271076	0.85[EUR][1000 genomes]
rs2272214	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]
rs2275235	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs2275236	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs2280627	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2864869	0.81[EUR][1000 genomes]
rs2864871	0.81[ASN][1000 genomes]
rs2864873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2864882	0.90[EUR][1000 genomes]
rs2867297	0.85[EUR][1000 genomes]
rs2867301	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap]
rs2867302	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs36008098	0.92[EUR][1000 genomes]
rs3754212	0.82[EUR][1000 genomes]
rs3768005	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3768015	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768016	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768018	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs3849279	1.00[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4319334	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4451553	0.84[CEU][hapmap];0.80[GIH][hapmap]
rs4509581	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4537557	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs4970928	0.81[EUR][1000 genomes]
rs4970930	0.84[EUR][1000 genomes]
rs4970931	0.85[EUR][1000 genomes]
rs4970980	0.93[EUR][1000 genomes]
rs4970982	0.86[EUR][1000 genomes]
rs4970984	0.90[EUR][1000 genomes]
rs4970985	0.90[EUR][1000 genomes]
rs4970987	0.87[CEU][hapmap]
rs4970988	0.88[CEU][hapmap]
rs57818453	0.84[EUR][1000 genomes]
rs59337856	0.89[EUR][1000 genomes]
rs6587516	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6587518	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs6587542	0.85[EUR][1000 genomes]
rs6657388	0.82[EUR][1000 genomes]
rs6660084	0.89[EUR][1000 genomes]
rs6660845	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6661415	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6669855	0.89[EUR][1000 genomes]
rs6671737	0.82[EUR][1000 genomes]
rs6678013	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs66847267	0.90[EUR][1000 genomes]
rs6686064	0.85[EUR][1000 genomes]
rs6700022	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs72704639	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72704652	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72704654	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72704656	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72704658	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72704679	0.88[EUR][1000 genomes]
rs72704682	0.81[EUR][1000 genomes]
rs72704685	0.81[EUR][1000 genomes]
rs7412396	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs7418501	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs7511673	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7514004	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518156	0.81[EUR][1000 genomes]
rs7521592	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7521898	0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs752376	1.00[CEU][hapmap];0.80[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs7524620	0.85[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap]
rs7529194	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs7532045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538493	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs7540874	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs7556451	0.84[EUR][1000 genomes]
rs7556661	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs8444	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]
rs868751	0.91[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs897815	0.88[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs951281	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9661876	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	nsv872420	chr1:150786038-150847647	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1010875	chr1:150796816-150845827	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	esv1793983	chr1:150804748-150825924	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:42)

SNP	Gene	Cis/trans	Tissue	Source
rs3768013	RP11-316M1.12	cis	Muscle Skeletal	GTEx
rs3768013	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs3768013	ARNT	cis	lesional skin	skin_eQTL
rs3768013	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs3768013	HORMAD1	cis	lesional skin	skin_eQTL
rs3768013	HORMAD1	cis	Esophagus Mucosa	GTEx
rs3768013	HORMAD1	cis	cerebellum	SCAN
rs3768013	GOLPH3L	cis	Nerve Tibial	GTEx
rs3768013	CTSS	cis	Thyroid	GTEx
rs3768013	RP11-316M1.12	cis	Whole Blood	GTEx
rs3768013	RP11-316M1.12	cis	Artery Aorta	GTEx
rs3768013	CTSK	cis	parietal	SCAN
rs3768013	RP11-316M1.12	cis	lung	GTEx
rs3768013	GNRHR2	cis	cerebellum	SCAN
rs3768013	RP11-316M1.12	cis	Thyroid	GTEx
rs3768013	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs3768013	CTSK	cis	cerebellum	SCAN
rs3768013	RP11-316M1.12	cis	Esophagus Muscularis	GTEx
rs3768013	PSMD4	cis	parietal	SCAN
rs3768013	HFE2	cis	parietal	SCAN
rs3768013	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs3768013	CTSS	cis	cerebellum	SCAN
rs3768013	CTSS	cis	lymphoblastoid	seeQTL
rs3768013	CTSK	Cis_1M	lymphoblastoid	RTeQTL
rs3768013	CTSS	cis	multi-tissue	Pritchard
rs3768013	HORMAD1	cis	parietal	SCAN
rs3768013	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs3768013	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs3768013	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs3768013	ARNT	Cis_1M	lymphoblastoid	RTeQTL
rs3768013	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs3768013	HORMAD1	cis	Nerve Tibial	GTEx
rs3768013	ARNT	cis	cerebellum	SCAN
rs3768013	HORMAD1	cis	uninvolved skin	skin_eQTL
rs3768013	RORC	cis	parietal	SCAN
rs3768013	CTSS	cis	parietal	SCAN
rs3768013	HORMAD1	cis	normal skin	skin_eQTL
rs3768013	ARNT	cis	normal skin	skin_eQTL
rs3768013	RP11-316M1.12	cis	Skin Sun Exposed Lower leg	GTEx
rs3768013	RP11-316M1.12	cis	Artery Tibial	GTEx
rs3768013	ARNT	cis	parietal	SCAN
rs3768013	CTSS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150783200-150816600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:150783200-150816800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:150793000-150816400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:150793200-150823200	Strong transcription	Placenta	Placenta
5	chr1:150793600-150815800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:150797600-150815600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:150798200-150815600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:150799600-150816600	Strong transcription	HSMM	muscle
9	chr1:150799800-150817800	Strong transcription	Primary B cells from cord blood	blood
10	chr1:150801800-150818600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:150801800-150824600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:150805800-150824600	Weak transcription	HMEC	breast
13	chr1:150807200-150820800	Weak transcription	Spleen	Spleen
14	chr1:150807400-150824600	Weak transcription	A549	lung
15	chr1:150807400-150847000	Weak transcription	Colonic Mucosa	Colon
16	chr1:150808000-150821600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:150808800-150847000	Weak transcription	Psoas Muscle	Psoas
18	chr1:150809000-150816400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:150809000-150819200	Weak transcription	K562	blood
20	chr1:150809000-150823000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:150809000-150824400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:150809000-150824600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr1:150809200-150820600	Weak transcription	Brain Germinal Matrix	brain
24	chr1:150809200-150824600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:150809200-150846800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:150809400-150821000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:150809400-150821000	Weak transcription	Thymus	Thymus
28	chr1:150809400-150823200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:150809600-150820400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:150809600-150846000	Weak transcription	Pancreas	Pancrea
31	chr1:150810000-150824800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:150810200-150824600	Weak transcription	NHLF	lung
33	chr1:150810400-150846600	Weak transcription	Fetal Heart	heart
34	chr1:150812000-150815600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr1:150812000-150824400	Weak transcription	Fetal Brain Male	brain
36	chr1:150812000-150831200	Weak transcription	Lung	lung
37	chr1:150812000-150847000	Weak transcription	Gastric	stomach
38	chr1:150812200-150821600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr1:150812200-150822200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:150812200-150824600	Weak transcription	HepG2	liver
41	chr1:150812200-150824600	Weak transcription	NHEK	skin
42	chr1:150812200-150828000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr1:150812200-150829800	Weak transcription	HUVEC	blood vessel
44	chr1:150812200-150834000	Weak transcription	Brain Angular Gyrus	brain
45	chr1:150812400-150815800	Enhancers	Primary T cells from cord blood	blood
46	chr1:150812400-150816400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:150812400-150818400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr1:150812400-150818600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:150812400-150818800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:150812400-150819000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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