Variant report

Variant	rs4537557
Chromosome Location	chr1:150734436-150734437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150733435..150736065-chr1:150737703..150739768,2	K562	blood:

Variant related genes	Relation type
ENSG00000163131	Chromatin interaction

Extended variants
information (count: 186 )
Associated
traits (count: 38 )

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs1027699	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10305664	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10305672	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10305673	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10305704	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10305711	0.82[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10305714	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10399947	0.82[EUR][1000 genomes]
rs10788792	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs10788794	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10888391	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10888392	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10888393	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10888394	1.00[ASW][hapmap];0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888395	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10888397	1.00[CEU][hapmap];0.82[GIH][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10888398	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs11204691	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11204694	0.80[ASN][1000 genomes]
rs11204696	0.82[ASN][1000 genomes]
rs11204697	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs11204698	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs11204699	0.84[ASN][1000 genomes]
rs11204704	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs11204713	0.84[ASN][1000 genomes]
rs11204717	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11204718	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11204722	1.00[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11204723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204726	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204733	0.87[EUR][1000 genomes]
rs11204739	0.83[EUR][1000 genomes]
rs11204742	0.82[EUR][1000 genomes]
rs1134067	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1136808	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11552229	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11581757	1.00[CEU][hapmap];0.82[GIH][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs11582281	0.88[EUR][1000 genomes]
rs11582840	0.83[ASN][1000 genomes]
rs11583636	0.81[ASN][1000 genomes]
rs11584184	0.86[ASN][1000 genomes]
rs11584575	0.86[ASN][1000 genomes]
rs11586422	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs11587444	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11588404	0.83[ASN][1000 genomes]
rs11589458	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11800855	0.82[EUR][1000 genomes]
rs11803569	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs11803940	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs11804276	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs11805308	0.83[ASN][1000 genomes]
rs11807409	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs11807450	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs12063547	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs12064548	0.80[ASN][1000 genomes]
rs12064701	0.81[ASN][1000 genomes]
rs12068264	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12071245	0.81[ASN][1000 genomes]
rs12072339	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs12077833	0.83[ASN][1000 genomes]
rs12085275	0.81[ASN][1000 genomes]
rs12085336	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12085597	0.81[ASN][1000 genomes]
rs12086472	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.86[ASN][1000 genomes]
rs12089731	0.81[ASN][1000 genomes]
rs12089989	0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[ASN][1000 genomes]
rs12090215	0.83[EUR][1000 genomes]
rs12095002	0.81[ASN][1000 genomes]
rs12096831	0.84[EUR][1000 genomes]
rs12097963	0.83[EUR][1000 genomes]
rs12402939	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs12403255	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs12404949	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12409208	1.00[CEU][hapmap];0.95[GIH][hapmap];0.86[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs12410394	0.84[EUR][1000 genomes]
rs12410869	0.88[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap]
rs1336898	0.82[ASN][1000 genomes]
rs1336899	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs1336900	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs1415148	0.92[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1532770	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16827671	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17606613	0.83[ASN][1000 genomes]
rs17658705	0.92[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs17660092	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1828619	0.81[ASN][1000 genomes]
rs1889740	0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs1889741	0.88[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs1977714	0.83[ASN][1000 genomes]
rs1977715	0.83[ASN][1000 genomes]
rs1977716	0.83[ASN][1000 genomes]
rs2055975	0.87[YRI][hapmap]
rs2065900	0.81[ASN][1000 genomes]
rs2065901	0.81[ASN][1000 genomes]
rs2089082	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2124952	1.00[CEU][hapmap]
rs2184833	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs2228099	0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2230061	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2256355	0.87[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2272214	1.00[CEU][hapmap];0.82[GIH][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs2275235	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275236	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs2280078	1.00[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs2864869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2864871	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2864873	0.82[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs2867300	0.83[ASN][1000 genomes]
rs2867301	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs2867302	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs34600506	0.81[ASN][1000 genomes]
rs35111350	0.86[ASN][1000 genomes]
rs3754212	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3768013	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs3768015	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3768016	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3768018	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4319334	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4509581	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4970929	0.81[EUR][1000 genomes]
rs4970930	0.83[EUR][1000 genomes]
rs4970982	0.84[EUR][1000 genomes]
rs57818453	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59337856	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587516	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6587518	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs6587756	0.95[CHB][hapmap]
rs6655975	0.91[CHB][hapmap];0.83[MEX][hapmap]
rs6657388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6660084	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6660845	0.87[EUR][1000 genomes]
rs6661415	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6669855	0.82[EUR][1000 genomes]
rs6671737	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6678013	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6681990	0.86[ASN][1000 genomes]
rs6685702	0.82[ASN][1000 genomes]
rs6692960	0.86[ASN][1000 genomes]
rs6693120	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6700022	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs72702523	0.81[ASN][1000 genomes]
rs72702536	0.83[ASN][1000 genomes]
rs72702552	0.83[ASN][1000 genomes]
rs72702554	0.83[ASN][1000 genomes]
rs72702556	0.83[ASN][1000 genomes]
rs72702557	0.83[ASN][1000 genomes]
rs72702558	0.83[ASN][1000 genomes]
rs72702570	0.83[ASN][1000 genomes]
rs72702573	0.83[ASN][1000 genomes]
rs72702580	0.83[ASN][1000 genomes]
rs72702585	0.86[ASN][1000 genomes]
rs72704603	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72704639	0.84[EUR][1000 genomes]
rs72704652	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704654	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704656	0.82[EUR][1000 genomes]
rs72704658	0.89[EUR][1000 genomes]
rs72704682	0.80[EUR][1000 genomes]
rs7412396	0.92[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.83[ASN][1000 genomes]
rs7418501	0.83[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7511673	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7514004	0.82[EUR][1000 genomes]
rs7521592	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7521898	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7524620	0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[YRI][hapmap]
rs7524734	0.81[ASN][1000 genomes]
rs7526489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7529194	0.90[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.95[YRI][hapmap]
rs7529998	0.83[ASN][1000 genomes]
rs7532045	0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7533678	0.86[ASN][1000 genomes]
rs7536404	0.81[ASN][1000 genomes]
rs7538493	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs7540874	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7544631	0.82[ASN][1000 genomes]
rs7549795	0.82[ASN][1000 genomes]
rs7556661	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs868751	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs897815	1.00[CEU][hapmap];0.89[GIH][hapmap];0.86[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs951281	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv872419	chr1:150699199-150738759	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1008381	chr1:150721254-150745558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:38)

SNP	Gene	Cis/trans	Tissue	Source
rs4537557	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs4537557	HFE2	cis	parietal	SCAN
rs4537557	PSMD4	cis	parietal	SCAN
rs4537557	RP11-316M1.12	cis	lung	GTEx
rs4537557	HORMAD1	cis	Nerve Tibial	GTEx
rs4537557	HORMAD1	cis	Esophagus Mucosa	GTEx
rs4537557	CTSS	cis	cerebellum	SCAN
rs4537557	HORMAD1	cis	cerebellum	SCAN
rs4537557	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs4537557	HORMAD1	cis	parietal	SCAN
rs4537557	CTSS	Cis_1M	lymphoblastoid	RTeQTL
rs4537557	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs4537557	CTSS	cis	Artery Tibial	GTEx
rs4537557	ARNT	cis	parietal	SCAN
rs4537557	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs4537557	CTSK	cis	cerebellum	SCAN
rs4537557	CTSS	cis	parietal	SCAN
rs4537557	RP11-316M1.12	cis	Artery Tibial	GTEx
rs4537557	CTSS	cis	Thyroid	GTEx
rs4537557	RORC	cis	parietal	SCAN
rs4537557	GOLPH3L	cis	Nerve Tibial	GTEx
rs4537557	CTSS	cis	multi-tissue	Pritchard
rs4537557	RP11-316M1.12	cis	Muscle Skeletal	GTEx
rs4537557	RP11-316M1.12	cis	Skin Sun Exposed Lower leg	GTEx
rs4537557	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs4537557	CTSK	Cis_1M	lymphoblastoid	RTeQTL
rs4537557	RP11-316M1.12	cis	Esophagus Muscularis	GTEx
rs4537557	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs4537557	ARNT	Cis_1M	lymphoblastoid	RTeQTL
rs4537557	RP11-316M1.12	cis	Thyroid	GTEx
rs4537557	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs4537557	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs4537557	RP11-316M1.12	cis	Artery Aorta	GTEx
rs4537557	CTSK	cis	lymphoblastoid	seeQTL
rs4537557	ARNT	cis	cerebellum	SCAN
rs4537557	RP11-316M1.12	cis	Whole Blood	GTEx
rs4537557	CTSK	cis	parietal	SCAN
rs4537557	CTSS	cis	lymphoblastoid	seeQTL

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150704000-150736600	Weak transcription	Fetal Stomach	stomach
2	chr1:150711000-150735600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:150712000-150737800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:150715800-150736200	Weak transcription	Small Intestine	intestine
5	chr1:150716600-150737000	Weak transcription	Pancreas	Pancrea
6	chr1:150720200-150736200	Weak transcription	Colonic Mucosa	Colon
7	chr1:150720600-150737800	Weak transcription	Brain Substantia Nigra	brain
8	chr1:150722400-150737000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:150723000-150738000	Weak transcription	Right Ventricle	heart
10	chr1:150724400-150737800	Weak transcription	Aorta	Aorta
11	chr1:150724600-150736200	Weak transcription	Gastric	stomach
12	chr1:150724600-150736400	Weak transcription	Esophagus	oesophagus
13	chr1:150727800-150734600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:150727800-150736200	Weak transcription	Adipose Nuclei	Adipose
15	chr1:150727800-150736200	Weak transcription	Lung	lung
16	chr1:150727800-150736400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:150727800-150737000	Weak transcription	Thymus	Thymus
18	chr1:150728000-150734600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:150729200-150737600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:150729800-150737000	Weak transcription	Spleen	Spleen
21	chr1:150730000-150736200	Weak transcription	Fetal Thymus	thymus
22	chr1:150730600-150735000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:150730600-150735000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:150730800-150738000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:150731000-150736200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr1:150731400-150734600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr1:150732200-150736200	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr1:150732200-150737200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
29	chr1:150732400-150737400	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
30	chr1:150733200-150734600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:150733200-150735800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr1:150733200-150736200	Weak transcription	Liver	Liver
33	chr1:150733400-150735600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr1:150733400-150735600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr1:150733400-150735600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr1:150733400-150736400	Weak transcription	Stomach Mucosa	stomach
37	chr1:150733600-150734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr1:150733600-150735000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:150733800-150734600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:150733800-150734800	ZNF genes & repeats	GM12878-XiMat	blood
41	chr1:150734000-150734800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:150734000-150737000	Weak transcription	Fetal Intestine Small	intestine
43	chr1:150734200-150734600	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr1:150734200-150736200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr1:150734200-150736400	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
46	chr1:150734400-150734800	Enhancers	Primary T cells from cord blood	blood
47	chr1:150734400-150735200	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr1:150734400-150735800	Active TSS	Primary hematopoietic stem cells	blood
49	chr1:150734400-150736200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr1:150734400-150736200	Enhancers	Primary T helper cells fromperipheralblood	blood

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