Variant report

Variant	rs7529194
Chromosome Location	chr1:150622620-150622621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150612822..150616835-chr1:150620844..150623146,3	K562	blood:
2	chr1:150601283..150603661-chr1:150621822..150624374,2	MCF-7	breast:
3	chr1:150606933..150609483-chr1:150622223..150624505,2	MCF-7	breast:
4	chr1:150617291..150619011-chr1:150620335..150622821,2	K562	blood:
5	chr1:150550920..150553048-chr1:150621004..150623785,2	K562	blood:

Variant related genes	Relation type
ENSG00000143384	Chromatin interaction
ENSG00000143420	Chromatin interaction

Extended variants
information (count: 159 )
Associated
traits (count: 26 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10305704	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[YRI][hapmap]
rs10305711	0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs10305714	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[YRI][hapmap]
rs10788792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10788794	0.85[ASN][1000 genomes]
rs10888386	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10888387	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888391	0.90[ASW][hapmap];0.90[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.91[YRI][hapmap];0.85[ASN][1000 genomes]
rs10888394	0.90[ASW][hapmap];0.95[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.95[YRI][hapmap]
rs11204687	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204691	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204692	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11204694	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11204696	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204697	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11204698	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11204699	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11204704	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11204705	0.89[ASN][1000 genomes]
rs11204713	0.91[ASN][1000 genomes]
rs11204717	0.89[ASN][1000 genomes]
rs11204718	0.87[ASN][1000 genomes]
rs11204722	0.90[ASW][hapmap];0.95[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.95[YRI][hapmap];0.85[ASN][1000 genomes]
rs11204726	0.90[ASW][hapmap];0.95[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.95[YRI][hapmap]
rs1134067	0.85[ASN][1000 genomes]
rs1136808	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11552229	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs11579902	0.81[ASN][1000 genomes]
rs11582840	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11583636	0.88[ASN][1000 genomes]
rs11584184	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11584575	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11586422	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11587444	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs11588404	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11589458	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11803569	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11803940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11804276	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11805308	0.94[ASN][1000 genomes]
rs11807058	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11807238	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11807409	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11807450	0.90[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12063547	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12064548	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12064701	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12067556	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12068264	0.85[ASN][1000 genomes]
rs12071245	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12072339	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12077833	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12085275	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12085336	0.89[ASW][hapmap];0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.91[YRI][hapmap]
rs12085597	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12086472	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12086630	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12089731	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12089989	0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12095002	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12402939	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12403255	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1336898	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336899	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336900	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MKK][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1415148	1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1532770	0.85[ASN][1000 genomes]
rs16827671	0.90[ASW][hapmap];0.95[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs17606613	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17658705	1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1828619	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1889740	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs1977714	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1977715	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1977716	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2055975	0.91[YRI][hapmap]
rs2065900	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2065901	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2175615	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175616	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2184833	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2228099	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs2230061	0.85[ASN][1000 genomes]
rs2256355	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs2275235	0.80[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.95[YRI][hapmap]
rs2275236	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2280078	1.00[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2864873	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs2867300	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2867301	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2867302	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2867304	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3087960	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34140753	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34600506	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35111350	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3768005	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768013	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs3768015	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[YRI][hapmap]
rs3768016	0.88[CEU][hapmap];0.95[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs3768018	0.90[ASW][hapmap];0.90[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];0.95[YRI][hapmap];0.85[ASN][1000 genomes]
rs4509581	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4537557	0.90[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.95[YRI][hapmap]
rs56058687	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56868972	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587516	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6587518	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6587756	0.95[CHB][hapmap]
rs6655975	0.90[CHB][hapmap];0.85[GIH][hapmap]
rs6661114	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6661306	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6661415	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6661872	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6661986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672754	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6678013	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6681426	0.84[ASN][1000 genomes]
rs6681990	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6685702	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6686525	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6690725	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6692960	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6700022	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72700895	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72700897	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72700902	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72702504	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72702523	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72702536	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72702552	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702554	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702556	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702557	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702558	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702570	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702573	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702580	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72702585	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72704603	0.89[ASN][1000 genomes]
rs7412396	1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7418501	0.90[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7511673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7521898	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7524620	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7524734	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7526489	0.85[ASN][1000 genomes]
rs7529998	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7532045	0.90[CHB][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap]
rs7533678	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7536404	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7538493	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7540874	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7544631	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7549795	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868751	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951281	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:26)

SNP	Gene	Cis/trans	Tissue	Source
rs7529194	RP11-316M1.12	cis	Esophagus Muscularis	GTEx
rs7529194	HORMAD1	cis	uninvolved skin	skin_eQTL
rs7529194	ARNT	cis	normal skin	skin_eQTL
rs7529194	CTSS	cis	Thyroid	GTEx
rs7529194	HORMAD1	cis	Esophagus Mucosa	GTEx
rs7529194	HORMAD1	cis	Nerve Tibial	GTEx
rs7529194	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs7529194	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs7529194	RP11-316M1.12	cis	Whole Blood	GTEx
rs7529194	RP11-316M1.12	cis	Muscle Skeletal	GTEx
rs7529194	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs7529194	GOLPH3L	cis	Nerve Tibial	GTEx
rs7529194	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs7529194	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs7529194	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs7529194	HORMAD1	cis	lesional skin	skin_eQTL
rs7529194	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs7529194	RP11-316M1.12	cis	Artery Aorta	GTEx
rs7529194	CTSS	cis	Lymphoblastoid	GTEx
rs7529194	RP11-316M1.12	cis	lung	GTEx
rs7529194	RP11-316M1.12	cis	Artery Tibial	GTEx
rs7529194	HORMAD1	cis	normal skin	skin_eQTL
rs7529194	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs7529194	CTSS	cis	multi-tissue	Pritchard
rs7529194	GOLPH3L	cis	lesional skin	skin_eQTL
rs7529194	RP11-316M1.12	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150603200-150661200	Weak transcription	Brain Substantia Nigra	brain
2	chr1:150603400-150668200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:150608600-150668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:150612600-150634400	Weak transcription	Psoas Muscle	Psoas
5	chr1:150615000-150631000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:150616200-150634400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:150617400-150623400	Strong transcription	Dnd41	blood
8	chr1:150617600-150623200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:150617600-150623400	Strong transcription	Fetal Thymus	thymus
10	chr1:150617600-150623600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr1:150617600-150627600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:150618000-150623600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:150618200-150622800	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:150618200-150623000	Strong transcription	Primary B cells from cord blood	blood
15	chr1:150618200-150623000	Strong transcription	Fetal Lung	lung
16	chr1:150618200-150623200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:150618200-150623200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr1:150618200-150623200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr1:150618200-150624600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:150618400-150623000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr1:150618400-150623200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:150618400-150623200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:150618400-150623200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr1:150618400-150623400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr1:150618400-150623400	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr1:150618400-150623800	Strong transcription	Primary T cells from cord blood	blood
27	chr1:150618600-150623200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr1:150618600-150623400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr1:150618800-150623200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr1:150618800-150626800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:150618800-150660400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:150619000-150623200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:150619000-150623200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr1:150619000-150623800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr1:150619200-150622800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr1:150619200-150637800	Weak transcription	Fetal Heart	heart
37	chr1:150619400-150623200	Strong transcription	Lung	lung
38	chr1:150619600-150623000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:150619600-150623200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:150619600-150623200	Strong transcription	Fetal Stomach	stomach
41	chr1:150619600-150623200	Strong transcription	Thymus	Thymus
42	chr1:150619600-150623400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:150619600-150623800	Strong transcription	Fetal Muscle Leg	muscle
44	chr1:150619800-150622800	Strong transcription	Brain Cingulate Gyrus	brain
45	chr1:150620000-150623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr1:150620200-150634200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:150620800-150632200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:150621000-150635600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr1:150621000-150640400	Weak transcription	Small Intestine	intestine
50	chr1:150621000-150660800	Weak transcription	Colon Smooth Muscle	Colon

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