Variant report

Variant	rs11204726
Chromosome Location	chr1:150743492-150743493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150742855..150744803-chr1:150749653..150752578,2	MCF-7	breast:
2	chr1:150743215..150744968-chr1:150746292..150748650,2	MCF-7	breast:
3	chr1:150737960..150741233-chr1:150743077..150746063,3	K562	blood:
4	chr1:150741916..150744860-chr1:150749050..150751954,2	K562	blood:
5	chr1:150738126..150741415-chr1:150742001..150744824,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163131	Chromatin interaction

Extended variants
information (count: 181 )
Associated
traits (count: 39 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs1027699	0.84[EUR][1000 genomes]
rs10305672	0.81[EUR][1000 genomes]
rs10305673	0.84[EUR][1000 genomes]
rs10305704	0.82[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs10305711	0.82[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs10305714	0.82[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs10305720	0.86[EUR][1000 genomes]
rs10399947	0.81[EUR][1000 genomes]
rs10788792	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs10788794	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10888391	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10888392	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10888393	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10888394	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888395	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888397	0.88[CEU][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap]
rs10888398	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs11204691	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs11204696	0.80[ASN][1000 genomes]
rs11204697	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11204698	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs11204699	0.80[ASN][1000 genomes]
rs11204704	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11204713	0.82[ASN][1000 genomes]
rs11204717	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11204718	0.83[ASN][1000 genomes]
rs11204722	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11204723	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204733	0.81[EUR][1000 genomes]
rs11204749	0.87[CEU][hapmap]
rs1134067	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1136808	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11552229	0.82[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11581757	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap]
rs11582281	0.83[EUR][1000 genomes]
rs11582840	0.81[ASN][1000 genomes]
rs11584184	0.84[ASN][1000 genomes]
rs11584575	0.84[ASN][1000 genomes]
rs11586422	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11587444	0.92[ASW][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11588404	0.81[ASN][1000 genomes]
rs11589458	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs11589886	0.82[EUR][1000 genomes]
rs11800855	0.90[EUR][1000 genomes]
rs11803569	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11803940	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs11804276	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11805308	0.81[ASN][1000 genomes]
rs11807409	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11807450	0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[ASN][1000 genomes]
rs12063547	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs12068264	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12072339	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs12075597	0.83[EUR][1000 genomes]
rs12077833	0.81[ASN][1000 genomes]
rs12085336	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12086472	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs12089989	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12402939	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs12403255	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs12404949	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12409208	0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap]
rs12410869	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1336898	0.80[ASN][1000 genomes]
rs1336899	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs1336900	0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[ASN][1000 genomes]
rs1415148	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1532770	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16827671	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17606613	0.81[ASN][1000 genomes]
rs17658705	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs17660092	0.84[EUR][1000 genomes]
rs1889740	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs1889741	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs1972060	0.81[EUR][1000 genomes]
rs1977714	0.81[ASN][1000 genomes]
rs1977715	0.81[ASN][1000 genomes]
rs1977716	0.81[ASN][1000 genomes]
rs2055975	0.87[YRI][hapmap]
rs2089082	0.84[EUR][1000 genomes]
rs2124952	0.88[CEU][hapmap]
rs2184833	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs2228099	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2230061	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2256355	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2271076	0.81[EUR][1000 genomes]
rs2272214	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap]
rs2275235	0.92[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275236	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs2280078	0.95[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs2280627	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2864869	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2864871	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2864873	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2864882	0.86[EUR][1000 genomes]
rs2867297	0.80[EUR][1000 genomes]
rs2867300	0.81[ASN][1000 genomes]
rs2867301	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs2867302	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs35111350	0.84[ASN][1000 genomes]
rs36008098	0.84[EUR][1000 genomes]
rs3754212	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3768005	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3768013	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs3768015	0.82[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs3768016	0.82[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs3768018	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4319334	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4451553	0.84[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.81[TSI][hapmap]
rs4509581	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4537557	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4970931	0.81[EUR][1000 genomes]
rs4970980	0.85[EUR][1000 genomes]
rs4970984	0.86[EUR][1000 genomes]
rs4970985	0.86[EUR][1000 genomes]
rs57818453	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59337856	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6587516	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6587518	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs6587542	0.81[EUR][1000 genomes]
rs6587756	0.91[CHB][hapmap]
rs6657388	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6660084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660845	0.81[EUR][1000 genomes]
rs6661415	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6669855	0.81[EUR][1000 genomes]
rs6671737	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6678013	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6681990	0.84[ASN][1000 genomes]
rs66847267	0.86[EUR][1000 genomes]
rs6685702	0.80[ASN][1000 genomes]
rs6686064	0.80[EUR][1000 genomes]
rs6692960	0.84[ASN][1000 genomes]
rs6693120	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6700022	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs72702536	0.81[ASN][1000 genomes]
rs72702552	0.81[ASN][1000 genomes]
rs72702554	0.81[ASN][1000 genomes]
rs72702556	0.81[ASN][1000 genomes]
rs72702557	0.81[ASN][1000 genomes]
rs72702558	0.81[ASN][1000 genomes]
rs72702570	0.81[ASN][1000 genomes]
rs72702573	0.81[ASN][1000 genomes]
rs72702580	0.81[ASN][1000 genomes]
rs72702585	0.84[ASN][1000 genomes]
rs72704603	0.84[ASN][1000 genomes]
rs72704652	0.84[EUR][1000 genomes]
rs72704654	0.84[EUR][1000 genomes]
rs72704656	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704658	0.83[EUR][1000 genomes]
rs72704679	0.84[EUR][1000 genomes]
rs7412396	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs7418501	0.83[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7511673	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7514004	0.90[EUR][1000 genomes]
rs7521592	0.84[EUR][1000 genomes]
rs7521898	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs752376	1.00[CEU][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap]
rs7524620	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap]
rs7526489	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7529194	0.90[ASW][hapmap];0.95[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.95[YRI][hapmap]
rs7529998	0.81[ASN][1000 genomes]
rs7532045	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7533678	0.84[ASN][1000 genomes]
rs7538493	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs7540874	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7544631	0.80[ASN][1000 genomes]
rs7549795	0.80[ASN][1000 genomes]
rs7556661	0.88[CEU][hapmap]
rs8444	0.88[CEU][hapmap];0.80[GIH][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap]
rs868751	0.92[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs897815	0.88[CEU][hapmap];0.86[GIH][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap]
rs951281	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9661876	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1008381	chr1:150721254-150745558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
7	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

mRNA abundance (count:39)

SNP	Gene	Cis/trans	Tissue	Source
rs11204726	PSMD4	cis	parietal	SCAN
rs11204726	HORMAD1	cis	cerebellum	SCAN
rs11204726	GOLPH3L	cis	Nerve Tibial	GTEx
rs11204726	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs11204726	CTSK	cis	cerebellum	SCAN
rs11204726	CTSK	cis	lymphoblastoid	seeQTL
rs11204726	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs11204726	ARNT	cis	cerebellum	SCAN
rs11204726	CTSS	cis	Artery Tibial	GTEx
rs11204726	CTSS	cis	parietal	SCAN
rs11204726	RP11-316M1.12	cis	Whole Blood	GTEx
rs11204726	GOLPH3L	cis	cerebellum	SCAN
rs11204726	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs11204726	CTSS	cis	multi-tissue	Pritchard
rs11204726	RP11-316M1.12	cis	Artery Aorta	GTEx
rs11204726	RP11-316M1.12	cis	Artery Tibial	GTEx
rs11204726	RP11-316M1.12	cis	Skin Sun Exposed Lower leg	GTEx
rs11204726	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs11204726	ARNT	cis	parietal	SCAN
rs11204726	RORC	cis	parietal	SCAN
rs11204726	RP11-316M1.12	cis	Thyroid	GTEx
rs11204726	CTSS	cis	lymphoblastoid	seeQTL
rs11204726	HORMAD1	cis	parietal	SCAN
rs11204726	HORMAD1	cis	Nerve Tibial	GTEx
rs11204726	RP11-316M1.12	cis	lung	GTEx
rs11204726	RP11-316M1.12	cis	Muscle Skeletal	GTEx
rs11204726	HFE2	cis	parietal	SCAN
rs11204726	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs11204726	CTSS	Cis_1M	lymphoblastoid	RTeQTL
rs11204726	CTSK	Cis_1M	lymphoblastoid	RTeQTL
rs11204726	CTSS	cis	Thyroid	GTEx
rs11204726	ARNT	Cis_1M	lymphoblastoid	RTeQTL
rs11204726	CTSK	cis	parietal	SCAN
rs11204726	CTSS	cis	cerebellum	SCAN
rs11204726	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs11204726	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs11204726	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs11204726	HORMAD1	cis	Esophagus Mucosa	GTEx
rs11204726	RP11-316M1.12	cis	Esophagus Muscularis	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150737200-150761800	Weak transcription	Spleen	Spleen
2	chr1:150742800-150744200	Enhancers	Fetal Thymus	thymus
3	chr1:150743000-150743600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr1:150743000-150744200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:150743000-150744400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:150743000-150744800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:150743200-150743600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr1:150743200-150743600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:150743200-150743600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:150743200-150743600	Enhancers	Thymus	Thymus
11	chr1:150743200-150743600	Flanking Active TSS	GM12878-XiMat	blood
12	chr1:150743200-150743800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:150743200-150743800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:150743200-150743800	Enhancers	Dnd41	blood
15	chr1:150743200-150744000	Enhancers	Primary B cells from peripheral blood	blood
16	chr1:150743200-150744400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr1:150743200-150744400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr1:150743200-150744600	Enhancers	Primary T cells from cord blood	blood
19	chr1:150743200-150744600	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:150743200-150744800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr1:150743400-150743600	Enhancers	Primary B cells from cord blood	blood
22	chr1:150743400-150743600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:150743400-150744000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:150743400-150744200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr1:150743400-150744200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr1:150743400-150744200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr1:150743400-150744600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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