Variant report

Variant	rs10888395
Chromosome Location	chr1:150762171-150762172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150594135..150596924-chr1:150761551..150763711,2	K562	blood:
2	chr1:150760391..150762375-chr1:150777172..150778820,2	MCF-7	breast:
3	chr1:150761240..150763209-chr1:150766177..150768567,2	MCF-7	breast:

Extended variants
information (count: 165 )
Associated
traits (count: 45 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1027699	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10305664	0.81[EUR][1000 genomes]
rs10305672	0.84[EUR][1000 genomes]
rs10305673	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10305704	0.82[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10305711	0.82[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10305714	0.82[ASW][hapmap];0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10305720	0.88[EUR][1000 genomes]
rs10399947	0.83[EUR][1000 genomes]
rs10788792	0.92[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs10788794	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10888391	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10888392	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10888393	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10888394	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888397	0.88[CEU][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs10888398	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs11204691	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs11204697	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs11204698	0.92[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs11204704	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs11204717	0.81[ASN][1000 genomes]
rs11204722	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11204723	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11204726	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204733	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11204747	0.82[EUR][1000 genomes]
rs11204748	0.81[EUR][1000 genomes]
rs11204749	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1134067	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1136808	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11552229	0.82[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11581757	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11582281	0.85[EUR][1000 genomes]
rs11584184	0.80[ASN][1000 genomes]
rs11584575	0.80[ASN][1000 genomes]
rs11586422	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs11587444	0.92[ASW][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11589458	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs11589886	0.84[EUR][1000 genomes]
rs11800855	0.92[EUR][1000 genomes]
rs11803569	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs11803940	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs11804276	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs11807409	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs11807450	0.90[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs12063547	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs12068264	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12072339	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs12075597	0.85[EUR][1000 genomes]
rs12085336	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12086472	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs12089989	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.80[ASN][1000 genomes]
rs12090215	0.81[EUR][1000 genomes]
rs12096831	0.81[EUR][1000 genomes]
rs12402939	0.91[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs12403255	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs12404949	0.89[AFR][1000 genomes]
rs12409208	0.88[CEU][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs12410394	0.81[EUR][1000 genomes]
rs12410869	1.00[CEU][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs1336899	0.92[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs1336900	0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs1415148	0.92[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1532770	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16827671	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17658705	0.92[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs17660092	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1889740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1889741	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs1972060	0.83[EUR][1000 genomes]
rs2055975	0.87[YRI][hapmap]
rs2089082	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2124952	0.88[CEU][hapmap]
rs2184833	0.92[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs2228099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2230061	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2256355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2271076	0.83[EUR][1000 genomes]
rs2272214	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap]
rs2275235	0.92[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275236	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs2280078	0.91[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs2280627	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2864869	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2864871	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2864873	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2864882	0.88[EUR][1000 genomes]
rs2867297	0.82[EUR][1000 genomes]
rs2867301	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs2867302	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs35111350	0.80[ASN][1000 genomes]
rs36008098	0.86[EUR][1000 genomes]
rs3754212	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768005	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3768013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs3768015	0.82[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3768016	0.82[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3768018	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3849279	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs4319334	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4451553	0.84[CEU][hapmap];0.80[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.81[TSI][hapmap]
rs4509581	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4537557	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4970931	0.83[EUR][1000 genomes]
rs4970980	0.87[EUR][1000 genomes]
rs4970982	0.81[EUR][1000 genomes]
rs4970984	0.88[EUR][1000 genomes]
rs4970985	0.88[EUR][1000 genomes]
rs4970987	0.87[CEU][hapmap]
rs4970988	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs57818453	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59337856	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587516	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6587518	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs6587542	0.83[EUR][1000 genomes]
rs6657388	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6660084	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6660845	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6661415	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6669855	0.83[EUR][1000 genomes]
rs6671737	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6678013	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6681990	0.80[ASN][1000 genomes]
rs66847267	0.88[EUR][1000 genomes]
rs6686064	0.82[EUR][1000 genomes]
rs6692960	0.80[ASN][1000 genomes]
rs6693120	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6700022	0.92[ASW][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs72702585	0.80[ASN][1000 genomes]
rs72704603	0.81[ASN][1000 genomes]
rs72704639	0.80[EUR][1000 genomes]
rs72704652	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72704654	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72704656	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704658	0.85[EUR][1000 genomes]
rs72704679	0.86[EUR][1000 genomes]
rs7412396	0.92[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs7418501	0.83[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7511673	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs7514004	0.92[EUR][1000 genomes]
rs7518156	0.80[EUR][1000 genomes]
rs7521592	0.86[EUR][1000 genomes]
rs7521898	0.92[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs752376	1.00[CEU][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs7524620	0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap]
rs7526489	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7529194	0.90[ASW][hapmap];0.90[CHB][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.95[YRI][hapmap]
rs7532045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7533678	0.80[ASN][1000 genomes]
rs7538493	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs7540874	0.92[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7556451	0.81[EUR][1000 genomes]
rs7556661	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs8444	0.88[CEU][hapmap];0.80[GIH][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap]
rs868751	0.92[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs897815	0.88[CEU][hapmap];0.86[GIH][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs951281	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9661876	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	nsv2788	chr1:150755334-150800785	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:45)

SNP	Gene	Cis/trans	Tissue	Source
rs10888395	HORMAD1	cis	lesional skin	skin_eQTL
rs10888395	ARNT	cis	Liver	GTEx
rs10888395	RP11-316M1.12	cis	lung	GTEx
rs10888395	RP11-316M1.12	cis	Muscle Skeletal	GTEx
rs10888395	HORMAD1	cis	uninvolved skin	skin_eQTL
rs10888395	ARNT	cis	parietal	SCAN
rs10888395	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs10888395	GOLPH3L	cis	cerebellum	SCAN
rs10888395	CTSK	cis	lymphoblastoid	seeQTL
rs10888395	CTSK	cis	cerebellum	SCAN
rs10888395	RP11-316M1.12	cis	Esophagus Muscularis	GTEx
rs10888395	HORMAD1	cis	Esophagus Mucosa	GTEx
rs10888395	ARNT	cis	lesional skin	skin_eQTL
rs10888395	HORMAD1	cis	normal skin	skin_eQTL
rs10888395	CTSS	cis	multi-tissue	Pritchard
rs10888395	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs10888395	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs10888395	CTSS	cis	Lymphoblastoid	GTEx
rs10888395	HORMAD1	cis	parietal	SCAN
rs10888395	CTSK	cis	parietal	SCAN
rs10888395	CTSS	cis	Thyroid	GTEx
rs10888395	RORC	cis	parietal	SCAN
rs10888395	RP11-316M1.12	cis	Skin Sun Exposed Lower leg	GTEx
rs10888395	RP11-316M1.12	cis	Artery Aorta	GTEx
rs10888395	CTSS	cis	parietal	SCAN
rs10888395	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs10888395	HORMAD1	cis	cerebellum	SCAN
rs10888395	HFE2	cis	parietal	SCAN
rs10888395	CTSS	cis	cerebellum	SCAN
rs10888395	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs10888395	ARNT	cis	cerebellum	SCAN
rs10888395	CTSS	cis	lymphoblastoid	seeQTL
rs10888395	ARNT	cis	normal skin	skin_eQTL
rs10888395	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs10888395	CTSS	cis	Artery Tibial	GTEx
rs10888395	CTSK	cis	multi-tissue	Pritchard
rs10888395	GOLPH3L	cis	Nerve Tibial	GTEx
rs10888395	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs10888395	RP11-316M1.12	cis	Artery Tibial	GTEx
rs10888395	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs10888395	ARNT	cis	uninvolved skin	skin_eQTL
rs10888395	HORMAD1	cis	Nerve Tibial	GTEx
rs10888395	RP11-316M1.12	cis	Whole Blood	GTEx
rs10888395	RP11-316M1.12	cis	Thyroid	GTEx
rs10888395	PSMD4	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150744600-150768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:150750600-150767600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:150756200-150766800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:150756400-150767600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:150758000-150763800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:150758800-150768400	Weak transcription	Brain Germinal Matrix	brain
7	chr1:150759800-150764800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:150760400-150768200	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:150760400-150771000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:150760600-150763800	Enhancers	Primary B cells from cord blood	blood
11	chr1:150760600-150768200	Weak transcription	Adipose Nuclei	Adipose
12	chr1:150760600-150768200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:150760600-150768400	Weak transcription	Fetal Lung	lung
14	chr1:150760600-150768800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:150760600-150768800	Weak transcription	Fetal Intestine Small	intestine
16	chr1:150760600-150769000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:150760600-150770200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:150760600-150771000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:150760600-150771400	Weak transcription	Fetal Kidney	kidney
20	chr1:150760600-150779600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr1:150760800-150763600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr1:150760800-150768200	Weak transcription	NHLF	lung
23	chr1:150760800-150768600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:150760800-150768800	Weak transcription	Brain Anterior Caudate	brain
25	chr1:150760800-150771000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:150761000-150764200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:150761000-150768000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:150761000-150768000	Weak transcription	Left Ventricle	heart
29	chr1:150761000-150768400	Weak transcription	Colonic Mucosa	Colon
30	chr1:150761200-150768000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:150761200-150768000	Weak transcription	Aorta	Aorta
32	chr1:150761200-150771000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr1:150761200-150783200	Weak transcription	GM12878-XiMat	blood
34	chr1:150761600-150762600	Enhancers	Placenta	Placenta
35	chr1:150761800-150762400	Enhancers	Pancreas	Pancrea
36	chr1:150761800-150762400	Enhancers	NHEK	skin
37	chr1:150761800-150762600	Enhancers	Ovary	ovary
38	chr1:150761800-150762600	Enhancers	Spleen	Spleen
39	chr1:150761800-150770800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:150762000-150762200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:150762000-150762200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr1:150762000-150762400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr1:150762000-150762400	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr1:150762000-150762400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:150762000-150767800	Weak transcription	NHDF-Ad	bronchial

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