Variant report

Variant	rs6587516
Chromosome Location	chr1:150623221-150623222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150601283..150603661-chr1:150621822..150624374,2	MCF-7	breast:
2	chr1:150606933..150609483-chr1:150622223..150624505,2	MCF-7	breast:
3	chr1:150617651..150620563-chr1:150622833..150625095,2	K562	blood:
4	chr1:150550920..150553048-chr1:150621004..150623785,2	K562	blood:
5	chr1:150600802..150602980-chr1:150622735..150624840,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143384	Chromatin interaction
ENSG00000143420	Chromatin interaction

Extended variants
information (count: 159 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10305704	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs10305711	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs10305714	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs10788792	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10788794	0.86[ASN][1000 genomes]
rs10888386	0.91[ASN][1000 genomes]
rs10888387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888391	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes]
rs10888394	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs11204687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204691	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11204692	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204694	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204696	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11204697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204698	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11204699	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11204704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204705	0.90[ASN][1000 genomes]
rs11204713	0.92[ASN][1000 genomes]
rs11204717	0.90[ASN][1000 genomes]
rs11204718	0.88[ASN][1000 genomes]
rs11204722	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.86[ASN][1000 genomes]
rs11204726	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs1134067	0.85[ASN][1000 genomes]
rs1136808	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11552229	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs11579902	0.82[ASN][1000 genomes]
rs11582840	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11583636	0.89[ASN][1000 genomes]
rs11584184	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11584575	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11586422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11587444	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs11588404	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11589458	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11803569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11803940	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11804276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11805308	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11807058	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11807238	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11807409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11807450	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12063547	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12064548	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12064701	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12067556	0.90[ASN][1000 genomes]
rs12068264	0.85[ASN][1000 genomes]
rs12071245	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12072339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12077833	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12085275	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12085336	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap]
rs12085597	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12086472	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12086630	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12089731	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12089989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12095002	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12402939	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12403255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1336898	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1336899	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1336900	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1415148	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1532770	0.86[ASN][1000 genomes]
rs16827671	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs17606613	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17658705	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1828619	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1889740	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1977714	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1977715	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1977716	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055975	0.91[YRI][hapmap]
rs2065900	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2065901	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175616	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2184833	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2228099	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2230061	0.85[ASN][1000 genomes]
rs2256355	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2275235	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs2275236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280078	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs2864873	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs2867300	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867304	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3087960	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34140753	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34600506	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35111350	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3768005	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3768013	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs3768015	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs3768016	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs3768018	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.86[ASN][1000 genomes]
rs4509581	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs4537557	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs56058687	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56868972	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587756	0.91[CHB][hapmap]
rs6655975	0.86[CHB][hapmap]
rs6661114	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661306	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6661415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6661872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6661986	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6672754	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6678013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681426	0.84[ASN][1000 genomes]
rs6681990	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6685702	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6686525	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6690725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6692960	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6700022	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72700895	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72700897	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72700902	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72702504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72702523	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72702536	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702552	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702554	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702556	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702557	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702558	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702570	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702573	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702580	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72702585	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72704603	0.90[ASN][1000 genomes]
rs7412396	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7418501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7511673	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7521898	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7524620	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7524734	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7526489	0.85[ASN][1000 genomes]
rs7529194	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7529998	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7532045	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs7533678	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7536404	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7544631	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7549795	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868751	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs951281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs6587516	HORMAD1	cis	normal skin	skin_eQTL
rs6587516	GOLPH3L	cis	Skin Sun Exposed Lower leg	GTEx
rs6587516	RP11-316M1.12	cis	Heart Left Ventricle	GTEx
rs6587516	HORMAD1	cis	uninvolved skin	skin_eQTL
rs6587516	CTSS	cis	Lymphoblastoid	GTEx
rs6587516	RP11-316M1.12	cis	Thyroid	GTEx
rs6587516	RP11-316M1.12	cis	lung	GTEx
rs6587516	RP11-316M1.12	cis	Adipose Subcutaneous	GTEx
rs6587516	CTSK	Cis_1M	lymphoblastoid	RTeQTL
rs6587516	RP11-316M1.12	cis	Whole Blood	GTEx
rs6587516	HORMAD1	cis	Nerve Tibial	GTEx
rs6587516	GOLPH3L	cis	Nerve Tibial	GTEx
rs6587516	RNU6-1042P	cis	Esophagus Mucosa	GTEx
rs6587516	HORMAD1	cis	Adipose Subcutaneous	GTEx
rs6587516	CTSS	cis	multi-tissue	Pritchard
rs6587516	ARNT	Cis_1M	lymphoblastoid	RTeQTL
rs6587516	ARNT	cis	normal skin	skin_eQTL
rs6587516	RP11-316M1.12	cis	Artery Tibial	GTEx
rs6587516	GOLPH3L	cis	lesional skin	skin_eQTL
rs6587516	RP11-316M1.12	cis	Esophagus Mucosa	GTEx
rs6587516	RP11-316M1.12	cis	Esophagus Muscularis	GTEx
rs6587516	CTSS	Cis_1M	lymphoblastoid	RTeQTL
rs6587516	CTSS	cis	Thyroid	GTEx
rs6587516	RP11-316M1.12	cis	Nerve Tibial	GTEx
rs6587516	RP11-316M1.12	cis	Muscle Skeletal	GTEx
rs6587516	HORMAD1	cis	Esophagus Mucosa	GTEx
rs6587516	HORMAD1	cis	Skin Sun Exposed Lower leg	GTEx
rs6587516	HORMAD1	cis	lesional skin	skin_eQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150603200-150661200	Weak transcription	Brain Substantia Nigra	brain
2	chr1:150603400-150668200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:150608600-150668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:150612600-150634400	Weak transcription	Psoas Muscle	Psoas
5	chr1:150615000-150631000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:150616200-150634400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:150617400-150623400	Strong transcription	Dnd41	blood
8	chr1:150617600-150623400	Strong transcription	Fetal Thymus	thymus
9	chr1:150617600-150623600	Strong transcription	Primary B cells from peripheral blood	blood
10	chr1:150617600-150627600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:150618000-150623600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:150618200-150624600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:150618400-150623400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr1:150618400-150623400	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:150618400-150623800	Strong transcription	Primary T cells from cord blood	blood
16	chr1:150618600-150623400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:150618800-150626800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:150618800-150660400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:150619000-150623800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:150619200-150637800	Weak transcription	Fetal Heart	heart
21	chr1:150619600-150623400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:150619600-150623800	Strong transcription	Fetal Muscle Leg	muscle
23	chr1:150620200-150634200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:150620800-150632200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:150621000-150635600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr1:150621000-150640400	Weak transcription	Small Intestine	intestine
27	chr1:150621000-150660800	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:150621200-150629800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:150621200-150630000	Weak transcription	Aorta	Aorta
30	chr1:150621200-150630800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:150621200-150632200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:150621200-150632200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:150621200-150632800	Weak transcription	K562	blood
34	chr1:150621200-150632800	Weak transcription	NHLF	lung
35	chr1:150621200-150633200	Weak transcription	HMEC	breast
36	chr1:150621200-150633800	Weak transcription	NH-A	brain
37	chr1:150621200-150660400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:150621200-150664800	Weak transcription	Fetal Brain Female	brain
39	chr1:150621200-150665000	Weak transcription	Fetal Kidney	kidney
40	chr1:150621200-150669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:150621400-150629800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr1:150621400-150632800	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:150621400-150634400	Weak transcription	Brain Anterior Caudate	brain
44	chr1:150621400-150635200	Weak transcription	GM12878-XiMat	blood
45	chr1:150621400-150637000	Weak transcription	Fetal Brain Male	brain
46	chr1:150621400-150639400	Weak transcription	HepG2	liver
47	chr1:150621400-150644200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr1:150621400-150660400	Weak transcription	HSMM	muscle
49	chr1:150621600-150629800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:150621600-150630600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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