The 2.0 version of rSNPBase

Variant report

Variant rs56868972
Chromosome Location chr1:150617154-150617155
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150603000-150619000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:150603000-150619600 Weak transcription Small Intestine intestine
3 chr1:150603200-150617400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:150603200-150618600 Weak transcription Stomach Smooth Muscle stomach
5 chr1:150603200-150619600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:150603200-150619600 Weak transcription Fetal Intestine Small intestine
7 chr1:150603200-150619600 Weak transcription Fetal Stomach stomach
8 chr1:150603200-150619800 Weak transcription Brain Cingulate Gyrus brain
9 chr1:150603200-150620000 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:150603200-150620000 Weak transcription Gastric stomach
11 chr1:150603200-150620000 Weak transcription Rectal Smooth Muscle rectum
12 chr1:150603200-150620600 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:150603200-150620600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:150603200-150661200 Weak transcription Brain Substantia Nigra brain
15 chr1:150603400-150618000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:150603400-150618200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:150603400-150618200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:150603400-150618200 Weak transcription Adipose Nuclei Adipose
19 chr1:150603400-150618800 Weak transcription Osteobl bone
20 chr1:150603400-150619000 Weak transcription Fetal Muscle Trunk muscle
21 chr1:150603400-150620000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:150603400-150620400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr1:150603400-150620600 Weak transcription Right Ventricle heart
24 chr1:150603400-150620600 Weak transcription A549 lung
25 chr1:150603400-150620800 Weak transcription Spleen Spleen
26 chr1:150603400-150621600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:150603400-150621600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:150603400-150668200 Weak transcription Brain Germinal Matrix brain
29 chr1:150603600-150618200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:150603600-150619800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:150603800-150619400 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr1:150604000-150618000 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr1:150604200-150619600 Weak transcription Left Ventricle heart
34 chr1:150604200-150620400 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:150607400-150620600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:150608000-150619600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr1:150608200-150618200 Weak transcription Primary B cells from cord blood blood
38 chr1:150608200-150618400 Weak transcription Primary monocytes fromperipheralblood blood
39 chr1:150608200-150619200 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr1:150608400-150617600 Weak transcription Primary B cells from peripheral blood blood
41 chr1:150608400-150618000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:150608400-150618400 Weak transcription Primary hematopoietic stem cells blood
43 chr1:150608400-150618400 Weak transcription Placenta Placenta
44 chr1:150608600-150618400 Weak transcription Fetal Intestine Large intestine
45 chr1:150608600-150619400 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr1:150608600-150619400 Weak transcription Stomach Mucosa stomach
47 chr1:150608600-150619600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr1:150608600-150620600 Weak transcription Hela-S3 cervix
49 chr1:150608600-150668600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr1:150608800-150617600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015