Variant report

Variant	rs3851202
Chromosome Location	chr6:113702637-113702638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113696986..113699351-chr6:113701475..113704316,2	MCF-7	breast:
2	chr6:113701651..113703892-chr6:113706663..113709047,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs586027	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6568780	0.95[CHB][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6905868	0.86[ASN][1000 genomes]
rs6910133	0.96[CHB][hapmap];0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6931015	0.82[YRI][hapmap]
rs9374392	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9387138	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9400616	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9488159	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9632499	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3379922	chr6:113700309-113702682	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3413587	chr6:113700638-113703347	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3473195	chr6:113700879-113703213	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3473196	chr6:113700879-113703213	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv19787	chr6:113701811-113703135	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv604520	chr6:113701839-113702710	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv604521	chr6:113701839-113702984	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv604523	chr6:113701892-113702710	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv604524	chr6:113701892-113702984	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv604525	chr6:113701949-113702710	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv604526	chr6:113701949-113702984	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv604527	chr6:113702001-113702984	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv604529	chr6:113702034-113702984	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv604530	chr6:113702112-113702984	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv604531	chr6:113702235-113702984	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113698600-113703200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:113698600-113703200	Weak transcription	HUVEC	blood vessel
3	chr6:113698800-113705800	Weak transcription	NH-A	brain
4	chr6:113699000-113704600	Weak transcription	Osteobl	bone
5	chr6:113699200-113706400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:113699400-113703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:113699600-113703400	Weak transcription	Fetal Stomach	stomach
8	chr6:113700600-113702800	Weak transcription	HSMM	muscle
9	chr6:113700800-113703200	Weak transcription	A549	lung
10	chr6:113701000-113703200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:113701800-113703600	Enhancers	NHDF-Ad	bronchial
12	chr6:113702000-113702800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:113702200-113703400	Enhancers	GM12878-XiMat	blood
14	chr6:113702200-113703600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:113702200-113703800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:113702200-113704000	Enhancers	NHLF	lung
17	chr6:113702200-113705000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:113702400-113702800	Weak transcription	Fetal Lung	lung
19	chr6:113702400-113703600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:113702600-113703200	Enhancers	NHEK	skin
21	chr6:113702600-113703400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:113702600-113703600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links