Variant report

Variant	rs9488159
Chromosome Location	chr6:113696524-113696525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3851202	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs586027	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6568780	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6905868	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6910133	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9374392	0.98[ASN][1000 genomes]
rs9387138	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9400616	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9632499	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113686600-113697200	Weak transcription	HSMMtube	muscle
2	chr6:113686800-113696800	Weak transcription	HSMM	muscle
3	chr6:113687200-113697000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:113688000-113697000	Weak transcription	NH-A	brain
5	chr6:113691400-113697200	Enhancers	NHDF-Ad	bronchial
6	chr6:113692600-113697200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:113693000-113697000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:113693400-113697200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:113694000-113697000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:113694400-113697000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:113695600-113697000	Enhancers	Osteobl	bone
12	chr6:113695800-113699000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:113696000-113697000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:113696000-113697000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:113696000-113698600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:113696200-113696600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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