Variant report

Variant	rs9400616
Chromosome Location	chr6:113699509-113699510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3851202	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs586027	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6568780	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6905868	0.86[ASN][1000 genomes]
rs6910133	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9374392	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9387138	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9488159	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9632499	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113697200-113699600	Enhancers	Fetal Stomach	stomach
2	chr6:113697400-113700400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113697800-113700400	Weak transcription	A549	lung
4	chr6:113698200-113702600	Weak transcription	NHEK	skin
5	chr6:113698600-113702000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113698600-113703200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:113698600-113703200	Weak transcription	HUVEC	blood vessel
8	chr6:113698800-113700800	Enhancers	Fetal Kidney	kidney
9	chr6:113698800-113702400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:113698800-113705800	Weak transcription	NH-A	brain
11	chr6:113699000-113700200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:113699000-113700400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:113699000-113700400	Weak transcription	HSMM	muscle
14	chr6:113699000-113702200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:113699000-113702200	Weak transcription	Fetal Lung	lung
16	chr6:113699000-113704600	Weak transcription	Osteobl	bone
17	chr6:113699200-113706400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:113699400-113700600	Weak transcription	NHDF-Ad	bronchial
19	chr6:113699400-113702200	Weak transcription	GM12878-XiMat	blood
20	chr6:113699400-113702200	Weak transcription	NHLF	lung
21	chr6:113699400-113703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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