Variant report

Variant	rs9374392
Chromosome Location	chr6:113693795-113693796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1168133	0.89[EUR][1000 genomes]
rs3851202	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586027	0.91[ASN][1000 genomes]
rs6568780	0.89[ASN][1000 genomes]
rs6905868	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6910133	0.91[ASN][1000 genomes]
rs9387138	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400616	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9488159	0.98[ASN][1000 genomes]
rs9632499	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113686600-113697200	Weak transcription	HSMMtube	muscle
2	chr6:113686800-113693800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:113686800-113696800	Weak transcription	HSMM	muscle
4	chr6:113687000-113696000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:113687200-113695800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:113687200-113697000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:113688000-113697000	Weak transcription	NH-A	brain
8	chr6:113689200-113695400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:113691400-113697200	Enhancers	NHDF-Ad	bronchial
10	chr6:113692600-113697200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:113693000-113697000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:113693200-113694400	Weak transcription	Osteobl	bone
13	chr6:113693400-113697200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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