Variant report

Variant	rs3862823
Chromosome Location	chr6:114017998-114017999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114009414..114019168-chr6:114176401..114180605,12	MCF-7	breast:
2	chr6:114017203..114020038-chr6:114083854..114086336,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

rs_ID	r²[population]
rs10085305	1.00[AMR][1000 genomes]
rs45564039	1.00[AMR][1000 genomes]
rs45618440	1.00[AMR][1000 genomes]
rs58004831	1.00[AMR][1000 genomes]
rs59623484	1.00[AMR][1000 genomes]
rs61163937	1.00[AMR][1000 genomes]
rs6931913	1.00[AMR][1000 genomes]
rs73545787	1.00[AMR][1000 genomes]
rs73545797	1.00[AMR][1000 genomes]
rs7744200	1.00[AMR][1000 genomes]
rs7760127	1.00[AMR][1000 genomes]
rs7760474	1.00[AMR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114014400-114020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:114015000-114020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:114015400-114020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:114015400-114020200	Enhancers	Osteobl	bone
5	chr6:114015600-114018400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:114015800-114019000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:114016000-114018600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:114016000-114020000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:114016200-114018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:114016200-114018200	Weak transcription	NHEK	skin
12	chr6:114016200-114018400	Weak transcription	HMEC	breast
13	chr6:114016200-114018600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:114016200-114018600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:114016200-114018600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:114016200-114019000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
18	chr6:114016400-114018000	Weak transcription	A549	lung
19	chr6:114016400-114018200	Weak transcription	HSMM	muscle
20	chr6:114016400-114018600	Weak transcription	NHLF	lung
21	chr6:114016400-114018800	Weak transcription	HSMMtube	muscle
22	chr6:114016400-114019400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:114016400-114022000	Weak transcription	Stomach Mucosa	stomach
24	chr6:114017000-114018000	Weak transcription	NH-A	brain
25	chr6:114017000-114020200	Enhancers	NHDF-Ad	bronchial
26	chr6:114017200-114018600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:114017400-114019800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:114017600-114018800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:114017600-114020000	Weak transcription	HepG2	liver
30	chr6:114017800-114019000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links