Variant report

Variant	rs7744200
Chromosome Location	chr6:114140159-114140160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10085305	1.00[AMR][1000 genomes]
rs3862823	1.00[AMR][1000 genomes]
rs45564039	1.00[AMR][1000 genomes]
rs45618440	1.00[AMR][1000 genomes]
rs58004831	1.00[AMR][1000 genomes]
rs59623484	1.00[AMR][1000 genomes]
rs61163937	1.00[AMR][1000 genomes]
rs6931913	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73545787	1.00[AMR][1000 genomes]
rs73545797	1.00[AMR][1000 genomes]
rs7760127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114134600-114146400	Weak transcription	Stomach Mucosa	stomach
2	chr6:114135600-114142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:114135600-114145600	Weak transcription	HSMM	muscle
4	chr6:114138800-114141200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:114139200-114140400	Enhancers	Fetal Intestine Large	intestine
6	chr6:114139400-114141400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:114139400-114143800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:114139600-114140200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:114139600-114140200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:114139600-114140200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:114139600-114140400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:114139600-114140400	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:114139600-114140400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:114139600-114141000	Active TSS	A549	lung
15	chr6:114139800-114140800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:114140000-114140200	Enhancers	Fetal Lung	lung
17	chr6:114140000-114140200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:114140000-114140400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr6:114140000-114141000	Enhancers	Liver	Liver
20	chr6:114140000-114141200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:114140000-114141200	Enhancers	HepG2	liver

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