Variant report

Variant	rs73545797
Chromosome Location	chr6:114079582-114079583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10085305	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3862823	1.00[AMR][1000 genomes]
rs45564039	1.00[AMR][1000 genomes]
rs45618440	1.00[AMR][1000 genomes]
rs58004831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59623484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61163937	1.00[AMR][1000 genomes]
rs6931913	1.00[AMR][1000 genomes]
rs73545787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744200	1.00[AMR][1000 genomes]
rs7760127	1.00[AMR][1000 genomes]
rs7760474	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv464023	chr6:114071720-114114057	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv604532	chr6:114071720-114114057	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114072000-114079600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:114077000-114085000	Weak transcription	Psoas Muscle	Psoas
3	chr6:114077400-114079600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:114077400-114080400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:114077600-114080200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:114077600-114080200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:114077600-114080800	Enhancers	GM12878-XiMat	blood
8	chr6:114077600-114083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:114077600-114084600	Weak transcription	HSMM	muscle
10	chr6:114078600-114079600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:114079200-114080600	Enhancers	Placenta	Placenta
12	chr6:114079200-114081400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:114079400-114080000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:114079400-114080800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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