Variant report

Variant	rs61163937
Chromosome Location	chr6:113955184-113955185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:113955153-113958280	GM12878	blood:	n/a	n/a
2	NFIC	chr6:113955183-113957042	GM12878	blood:	n/a	n/a
3	RELA	chr6:113955176-113956832	GM12878	blood:	n/a	n/a
4	MTA3	chr6:113955105-113956820	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:113955143-113957079	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:113955107-113956205	GM12892	blood:	n/a	n/a
7	MTA3	chr6:113955030-113956905	GM12878	blood:	n/a	n/a
8	TBP	chr6:113955169-113957564	GM12878	blood:	n/a	n/a
9	POLR2A	chr6:113955102-113956851	GM12878	blood:	n/a	n/a
10	CEBPB	chr6:113955104-113956701	GM12878	blood:	n/a	chr6:113955532-113955545 chr6:113955338-113955350 chr6:113955532-113955545
11	POLR2A	chr6:113955133-113956920	GM12878	blood:	n/a	n/a
12	PML	chr6:113955122-113956929	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113951154..113956306-chr6:114178159..114180970,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230943	TF binding region
ENSG00000155130	Chromatin interaction

rs_ID	r²[population]
rs10085305	1.00[AMR][1000 genomes]
rs3862823	1.00[AMR][1000 genomes]
rs58004831	1.00[AMR][1000 genomes]
rs59623484	1.00[AMR][1000 genomes]
rs73543865	1.00[AMR][1000 genomes]
rs73545787	1.00[AMR][1000 genomes]
rs73545797	1.00[AMR][1000 genomes]
rs7744200	1.00[AMR][1000 genomes]
rs7760127	1.00[AMR][1000 genomes]
rs7760474	1.00[AMR][1000 genomes]

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113943000-113956400	Weak transcription	Esophagus	oesophagus
2	chr6:113946600-113956000	Flanking Active TSS	GM12878-XiMat	blood
3	chr6:113952400-113958400	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:113952600-113957000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:113952600-113957600	Weak transcription	Gastric	stomach
6	chr6:113953200-113957800	Enhancers	Primary B cells from cord blood	blood
7	chr6:113953200-113958000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:113953600-113956000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:113953800-113955600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:113953800-113955800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:113953800-113957000	Enhancers	Fetal Intestine Small	intestine
12	chr6:113953800-113958000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:113954000-113955200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:113954000-113955600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:113954000-113956000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:113954000-113956200	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:113954000-113956400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:113954000-113957000	Enhancers	Stomach Mucosa	stomach
19	chr6:113954000-113957600	Weak transcription	Liver	Liver
20	chr6:113954000-113958000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:113954000-113958200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:113954000-113958400	Enhancers	Fetal Intestine Large	intestine
23	chr6:113954000-113958400	Enhancers	NHEK	skin
24	chr6:113954000-113958600	Enhancers	HepG2	liver
25	chr6:113954000-113963800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:113954200-113955200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:113954200-113955800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:113954200-113956000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr6:113954200-113956600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:113954200-113956600	Weak transcription	HSMMtube	muscle
31	chr6:113954200-113957800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:113954200-113958000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:113954200-113965600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:113954400-113955400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:113954400-113955400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:113954400-113955800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:113954400-113955800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:113954400-113955800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:113954400-113956000	Weak transcription	Small Intestine	intestine
41	chr6:113954400-113956600	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:113954400-113956800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:113954400-113957800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:113954400-113961200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:113954400-113964000	Weak transcription	Left Ventricle	heart
46	chr6:113954400-113964400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:113954600-113955600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:113954600-113955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:113954600-113955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:113954600-113955600	Weak transcription	Duodenum Mucosa	Duodenum

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