Variant report

Variant	rs3863162
Chromosome Location	chr5:42010368-42010369
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1355089	0.82[AMR][1000 genomes]
rs17739462	0.82[AMR][1000 genomes]
rs17847285	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2231917	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2329815	0.82[AMR][1000 genomes]
rs34226693	1.00[AFR][1000 genomes]
rs3863161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3863163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3863164	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4358568	1.00[AFR][1000 genomes]
rs4957171	0.82[AMR][1000 genomes]
rs4957172	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4957173	0.82[AMR][1000 genomes]
rs4957174	0.82[AMR][1000 genomes]
rs4957175	1.00[AFR][1000 genomes]
rs4957176	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4957177	0.93[AMR][1000 genomes]
rs4957200	1.00[AFR][1000 genomes]
rs4957419	0.82[AMR][1000 genomes]
rs4957421	0.82[AMR][1000 genomes]
rs4957422	0.82[AMR][1000 genomes]
rs4957423	0.82[AMR][1000 genomes]
rs4957425	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4957428	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4957429	0.82[AMR][1000 genomes]
rs4957431	0.82[AMR][1000 genomes]
rs4957432	0.82[AMR][1000 genomes]
rs4957433	0.81[AMR][1000 genomes]
rs4957435	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4957439	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
2	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
3	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
4	nsv880627	chr5:41966551-42087954	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1843569	chr5:42008999-42128184	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42008800-42014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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