Variant report

Variant	rs38903
Chromosome Location	chr7:116890886-116890887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2228946	1.00[CHD][hapmap]
rs38898	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs38899	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38912	1.00[ASN][1000 genomes]
rs38913	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs38917	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730772	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466608	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6944153	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv516761	chr7:116888161-116892846	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116888000-116892400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:116888800-116891200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116888800-116892600	Enhancers	NHDF-Ad	bronchial
4	chr7:116888800-116892600	Enhancers	Osteobl	bone
5	chr7:116889400-116892600	Enhancers	GM12878-XiMat	blood
6	chr7:116889800-116891000	Weak transcription	NHLF	lung
7	chr7:116889800-116892400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:116890200-116891200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:116890600-116892400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:116890600-116892600	Enhancers	Placenta	Placenta
11	chr7:116890600-116892600	Enhancers	HSMMtube	muscle
12	chr7:116890600-116892600	Enhancers	NH-A	brain
13	chr7:116890800-116891600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:116890800-116892400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:116890800-116892400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:116890800-116892600	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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