Variant report

Variant	rs4730772
Chromosome Location	chr7:116903076-116903077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs38898	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs38899	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs38903	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs38917	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466608	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6944153	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116900400-116903400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:116900600-116903600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:116900800-116904600	Weak transcription	NHDF-Ad	bronchial
4	chr7:116902200-116904000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:116902200-116904000	Enhancers	NHEK	skin
6	chr7:116902800-116903400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:116902800-116903400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:116902800-116903600	Enhancers	HMEC	breast
9	chr7:116902800-116904400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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