Variant report

Variant	rs6466608
Chromosome Location	chr7:116910024-116910025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116899094..116902058-chr7:116908237..116910049,2	MCF-7	breast:
2	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
3	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs38898	0.84[AMR][1000 genomes]
rs38899	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs38903	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs38917	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4730772	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6944153	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs887574	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909000-116911000	Enhancers	HMEC	breast
2	chr7:116909200-116910800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:116909200-116910800	Enhancers	HUVEC	blood vessel
4	chr7:116909200-116911000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:116909200-116911200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:116909200-116911200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:116909200-116912000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:116909400-116910200	Flanking Active TSS	A549	lung
9	chr7:116909400-116910400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:116909400-116910800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:116909800-116910600	Flanking Active TSS	NHEK	skin
13	chr7:116910000-116910200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:116910000-116910200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:116910000-116910200	Enhancers	NHDF-Ad	bronchial
16	chr7:116910000-116910200	Enhancers	NHLF	lung
17	chr7:116910000-116910400	Enhancers	Hela-S3	cervix
18	chr7:116910000-116910600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:116910000-116910800	Enhancers	HSMM	muscle
20	chr7:116910000-116910800	Enhancers	HSMMtube	muscle
21	chr7:116910000-116911000	Enhancers	NH-A	brain
22	chr7:116910000-116911200	Enhancers	Osteobl	bone

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