Variant report

Variant	rs38917
Chromosome Location	chr7:116900628-116900629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs38898	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs38899	0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38903	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38912	1.00[ASN][1000 genomes]
rs38913	1.00[ASN][1000 genomes]
rs4730772	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466608	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6944153	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116898800-116900800	Enhancers	Placenta Amnion	Placenta Amnion
2	chr7:116899000-116900800	Enhancers	NHDF-Ad	bronchial
3	chr7:116899200-116900800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:116899200-116900800	Enhancers	NHLF	lung
5	chr7:116899400-116900800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:116899400-116900800	Enhancers	HMEC	breast
7	chr7:116899400-116901200	Enhancers	HSMM	muscle
8	chr7:116899600-116900800	Enhancers	HSMMtube	muscle
9	chr7:116900400-116900800	Bivalent Enhancer	Osteobl	bone
10	chr7:116900400-116902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:116900400-116903400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:116900600-116902200	Weak transcription	NHEK	skin
13	chr7:116900600-116902800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:116900600-116903600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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