Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10035987	0.84[ASN][1000 genomes]
rs10064445	0.91[ASN][1000 genomes]
rs12514754	0.81[AMR][1000 genomes]
rs1482346	0.80[ASN][1000 genomes]
rs1482347	0.84[ASN][1000 genomes]
rs1482368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552156	0.84[ASN][1000 genomes]
rs1552158	0.84[ASN][1000 genomes]
rs1825205	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842760	0.80[ASN][1000 genomes]
rs1905135	0.81[AMR][1000 genomes]
rs2416333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34956734	0.81[AMR][1000 genomes]
rs34968446	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705469	0.84[ASN][1000 genomes]
rs4705470	0.84[ASN][1000 genomes]
rs6869773	0.80[AMR][1000 genomes]
rs6879991	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7710947	0.81[AMR][1000 genomes]
rs7734801	0.84[ASN][1000 genomes]
rs7734857	0.81[AMR][1000 genomes]
rs7737167	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432799	chr5:113077017-113150101	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599409	chr5:113079354-113184211	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018938	chr5:113080567-113185361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3891925	TSLP	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113084800-113085800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr5:113085000-113086400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:113085200-113085600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:113085200-113085600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:113085400-113086600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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