Variant report

Variant	rs1482347
Chromosome Location	chr5:113053253-113053254
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95359346..95360012-chr5:113052912..113053672,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10035987	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064445	0.84[ASN][1000 genomes]
rs10067380	0.82[AFR][1000 genomes]
rs10478140	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10478141	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11241226	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11746025	0.92[ASN][1000 genomes]
rs12332749	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12521147	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12521149	0.87[AMR][1000 genomes]
rs1482346	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1482368	0.84[ASN][1000 genomes]
rs1482369	0.84[ASN][1000 genomes]
rs1482373	0.84[ASN][1000 genomes]
rs1552156	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552157	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1552158	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825205	0.84[ASN][1000 genomes]
rs1842760	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1871908	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1871911	0.83[AMR][1000 genomes]
rs1871912	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1988077	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2101150	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2416333	0.84[ASN][1000 genomes]
rs2900076	0.84[ASN][1000 genomes]
rs3891925	0.84[ASN][1000 genomes]
rs4103040	0.89[ASN][1000 genomes]
rs4235749	0.92[ASN][1000 genomes]
rs4235750	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4296793	0.92[ASN][1000 genomes]
rs4443413	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4469191	0.82[AFR][1000 genomes]
rs4549518	1.00[YRI][hapmap]
rs4621553	0.92[ASN][1000 genomes]
rs4705469	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705470	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056094	0.92[ASN][1000 genomes]
rs6872692	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6879991	0.84[ASN][1000 genomes]
rs6881153	0.82[AFR][1000 genomes]
rs6891470	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6896340	0.82[AFR][1000 genomes]
rs7734801	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985411	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1482347	TSLP	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113049200-113057400	Weak transcription	Fetal Kidney	kidney
2	chr5:113051000-113058200	Weak transcription	Fetal Lung	lung
3	chr5:113053000-113053400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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