Variant report

Variant	rs4621553
Chromosome Location	chr5:113030164-113030165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035987	0.92[ASN][1000 genomes]
rs10050855	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10478140	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10478141	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241223	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11241224	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11746025	1.00[ASN][1000 genomes]
rs1384267	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1384268	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1384269	0.84[EUR][1000 genomes]
rs1482346	0.88[ASN][1000 genomes]
rs1482347	0.92[ASN][1000 genomes]
rs1552156	0.92[ASN][1000 genomes]
rs1552157	0.85[ASN][1000 genomes]
rs1552158	0.92[ASN][1000 genomes]
rs1842760	0.88[ASN][1000 genomes]
rs1988077	1.00[ASN][1000 genomes]
rs4103040	0.81[ASN][1000 genomes]
rs4235748	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4235749	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235750	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4285208	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4296793	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331886	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4443413	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705469	0.92[ASN][1000 genomes]
rs4705470	0.92[ASN][1000 genomes]
rs56056094	1.00[ASN][1000 genomes]
rs7443933	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7734801	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Sudden cardiac arrest	21658281	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4621553	TSLP	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113027200-113030400	Enhancers	Fetal Brain Male	brain
2	chr5:113027200-113030800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:113028200-113030200	Enhancers	Fetal Lung	lung
4	chr5:113028200-113030400	Enhancers	Fetal Kidney	kidney
5	chr5:113028200-113031000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:113029000-113030200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:113029200-113030200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:113029200-113030400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:113029200-113034800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:113029400-113031600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:113029600-113030400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:113029600-113030400	Enhancers	Brain Germinal Matrix	brain
13	chr5:113029600-113030600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:113029600-113030600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:113029600-113030800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:113029600-113030800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:113029800-113030200	Bivalent Enhancer	Brain Hippocampus Middle	brain
18	chr5:113029800-113031000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:113029800-113031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:113030000-113030400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:113030000-113030800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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