Variant report

Variant	rs10050855
Chromosome Location	chr5:113029231-113029232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10035549	0.93[ASN][1000 genomes]
rs11241223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11241224	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11241226	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12332749	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12332751	0.91[ASN][1000 genomes]
rs12656723	0.82[ASN][1000 genomes]
rs1384267	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1384268	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384269	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1384270	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1871908	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1871909	0.93[ASN][1000 genomes]
rs1871911	0.89[ASN][1000 genomes]
rs1871912	0.93[ASN][1000 genomes]
rs4235748	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4235749	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4235750	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4285208	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4296793	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4331886	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4443413	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4621553	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4705570	0.83[AFR][1000 genomes]
rs6872692	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6891470	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7443933	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs985411	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113027200-113030400	Enhancers	Fetal Brain Male	brain
2	chr5:113027200-113030800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:113028000-113029600	Enhancers	Fetal Heart	heart
4	chr5:113028000-113029800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:113028200-113029400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:113028200-113029600	Enhancers	Left Ventricle	heart
7	chr5:113028200-113030200	Enhancers	Fetal Lung	lung
8	chr5:113028200-113030400	Enhancers	Fetal Kidney	kidney
9	chr5:113028200-113031000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:113028400-113029400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:113028400-113029400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
12	chr5:113028400-113029400	Flanking Active TSS	Fetal Brain Female	brain
13	chr5:113028400-113029600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr5:113028400-113029600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:113028400-113029600	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr5:113028400-113029800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:113028400-113030000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr5:113028400-113030000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr5:113028600-113029400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:113028600-113029600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:113028600-113029600	Active TSS	Brain Substantia Nigra	brain
22	chr5:113028800-113029400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr5:113028800-113029400	Active TSS	Brain Angular Gyrus	brain
24	chr5:113028800-113029400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
25	chr5:113028800-113029400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
26	chr5:113028800-113029800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:113029000-113029600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr5:113029000-113029600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
29	chr5:113029000-113029600	Enhancers	Lung	lung
30	chr5:113029000-113029600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
31	chr5:113029000-113030200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:113029200-113029400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:113029200-113029600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr5:113029200-113029600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr5:113029200-113029600	Enhancers	Right Atrium	heart
36	chr5:113029200-113029800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr5:113029200-113029800	Enhancers	Adipose Nuclei	Adipose
38	chr5:113029200-113029800	Enhancers	Fetal Muscle Leg	muscle
39	chr5:113029200-113030000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr5:113029200-113030000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr5:113029200-113030200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr5:113029200-113030400	Enhancers	H1 Cell Line	embryonic stem cell
43	chr5:113029200-113034800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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