Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10035549	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050855	0.93[ASN][1000 genomes]
rs11241223	0.94[ASN][1000 genomes]
rs11241224	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11241226	0.99[ASN][1000 genomes]
rs12332749	0.97[ASN][1000 genomes]
rs12332751	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384267	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1384268	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1384269	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1384270	0.94[ASN][1000 genomes]
rs1871908	0.97[ASN][1000 genomes]
rs1871911	0.95[ASN][1000 genomes]
rs1871912	0.99[ASN][1000 genomes]
rs4103040	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4235748	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4285208	0.98[ASN][1000 genomes]
rs4331886	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4438868	0.84[ASN][1000 genomes]
rs6872692	0.99[ASN][1000 genomes]
rs6891470	0.99[ASN][1000 genomes]
rs7443933	0.96[ASN][1000 genomes]
rs985411	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1871909	KCNN2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113049200-113057400	Weak transcription	Fetal Kidney	kidney
2	chr5:113051000-113058200	Weak transcription	Fetal Lung	lung
3	chr5:113054200-113055600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:113054400-113055400	Enhancers	Fetal Stomach	stomach
5	chr5:113054600-113058400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:113055000-113058200	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search: