Variant report

Variant	rs4705470
Chromosome Location	chr5:113058120-113058121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10035987	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064445	0.84[ASN][1000 genomes]
rs10478140	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10478141	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11241226	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11746025	0.92[ASN][1000 genomes]
rs12332749	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12521147	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12521149	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1482346	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1482347	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482348	0.86[AFR][1000 genomes]
rs1482368	0.84[ASN][1000 genomes]
rs1482369	0.84[ASN][1000 genomes]
rs1482373	0.84[ASN][1000 genomes]
rs1552156	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552157	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1552158	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825205	0.84[ASN][1000 genomes]
rs1842760	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1871908	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1871911	0.80[AMR][1000 genomes]
rs1871912	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1988077	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2101150	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2416333	0.84[ASN][1000 genomes]
rs2900076	0.84[ASN][1000 genomes]
rs3891925	0.84[ASN][1000 genomes]
rs4103040	0.89[ASN][1000 genomes]
rs4235747	0.86[AFR][1000 genomes]
rs4235749	0.92[ASN][1000 genomes]
rs4235750	0.92[ASN][1000 genomes]
rs4296793	0.92[ASN][1000 genomes]
rs4443413	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4621553	0.92[ASN][1000 genomes]
rs4705469	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56056094	0.92[ASN][1000 genomes]
rs6872692	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6879991	0.84[ASN][1000 genomes]
rs6891470	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7734801	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985411	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4705470	TSLP	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113051000-113058200	Weak transcription	Fetal Lung	lung
2	chr5:113054600-113058400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:113055000-113058200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:113058000-113059600	Enhancers	Fetal Kidney	kidney
5	chr5:113058000-113059600	Enhancers	Fetal Stomach	stomach

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